Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4318 ATGGCATCTTGCTTGAACCCACAAATCAATGAAGATGACTCTCCCATACTCTTCTCAACTTCTAATTCCCCTCAAGACTCCATTAGTCCTTCTTCTTCTTCTTTCTACCATTCACCACCACCACAAAATTCATACAAACTTTCTATCAAAAACCTCATCTATACTTTACACCCTTACAACACCAACATTTCCTTTTCATTTTATCACCTTACTCAAAAACCACATCCTATAAACATACTCAAATCTGTCTCTTTTGTTGCCAGAACATCCGAGATTGTCGCCGTTGTTGGTCCTAGTGGCACGGGGAAATCAACCCTTCTCCGAATAATCGCTGGACGAGTTAAAGACAAAGACTTTGATTCAAAAACTATTTCAATCAATGACCACCCTATTAGTACTCCTTCTCAGTTAAGAAAAATATGCGGCTTTGTGTCACAAGAAGACAACTTGCTTCCACTTTTAACTGTGAAAGAAACATTGCTTTTTAGTGCAAAGTTTAGGCTAAAACAAATGACAGCAAAAGAAAGAGAATTGAGAGTAGAAAACTTAATGCAAGAGTTAGGACTTTTTCATGTTGCTGATAGTTTTGTTGGTAATGAAGAAAATAGAGGTGTGTCTGGTGGTGAAAGAAAAAGGGTATCAATTGGTGTTGATATGATTCATAATCCACCAATTTTAGTCTTAGATGAACCAACATCAGGACTTGATAGCACCTCAGCATTTCATGTGATTGAGCTTCTTTCATCAATGGCTAAATCAAAGCAAAGGATAGTGATTCTTTCAATTCATCAACCTAGTTATAGAATAATGCAGTATATTTCCAAGTTCTTGATTCTTTCTCATGGTTCAGTAGTTCACAATGGTAGTTTGGAATCACTAGAGGAAACAATATCTAATTTGGGATTTCAAATTCCATTACAGCTTAATCCTTTAGAATTTTCCATGGAAATTATACAAAGTTTAGAAGATTCTAGAAGTTCTATAATCGACGATAAAAACGAAACTTCCTTTCCAAGTTTAATTTGGCAAGAGGAAGAAAAAAGTGGAAGTGGAATTTTCCAAACACAAAATGAAAGGGAAAGTTATGGAAATCTTTGTTATGTAAACTTGATGGAGATATTATTTCTGTGTTCAAGATTTTGGAAGATTATTTATAGAACAAAGCAGCTATTTTTAGCAAGAACAATGCAAGCATTAGTTGGTGGATTTGGTTTAGGAAGTGTTTACATAAAGGTAAGAAAAGATGAAGATGGAATTGCAGAAAGGTTAGGTCTATTTGCATTTAGTCTCAGTTTTCTCTTGTCTTCAACAGTTGAAGCACTTCCAATATACCTTCAAGAAAGAACTGTTGTAATGAAAGAAGCATCAAGAGGAGCTTATAGAATATCATCTTACATGATAGCCAACACTGTGATTTTTCTTCCTTTTCTGTTTGTAGTTTCGGTACTTTTTGCCGTACCTGTTTATTGGATTGTAGGACTCAATCCTTCACTCAGTTCTTTCAGTTTTTTCACTTTTGTGGTTTGGCTCATTGTGCTGATGGCAAGTTCTTTGGTACTCTTTTTAAGTTCTGTGTCTCCTGATTTCATTTCAGGAAACTCACTTATTTGCACTGTTCTTGGAGCCTTCTTTTTATTCTCGGGATATTTTATTCCAAAAGAGAGTATTCCAAAATATTGGCTTTTTATGTATTATGTGTCACTTTATAGGTACCCTTTGGATGCACTTCTAACAAATGAGTATTGGGATGTTGGAAATGAGTGTTTTTCAGAACAAGGGTCTTCATCATCAAAGTGTTTGGTTACTGGATTTGATGTGTTGAAGAGTAGAGGAATTGAAAAGGATAATAGGTGGATGAATGTCGGAATAATGGTTGCTTTCTTTGTGTTCTATCGTTTGCTTTGTTGGATCATACTTGCGAGAAAGGCCTCCAAGACAACACTATAA 1947 0.3529 MASCLNPQINEDDSPILFSTSNSPQDSISPSSSSFYHSPPPQNSYKLSIKNLIYTLHPYNTNISFSFYHLTQKPHPINILKSVSFVARTSEIVAVVGPSGTGKSTLLRIIAGRVKDKDFDSKTISINDHPISTPSQLRKICGFVSQEDNLLPLLTVKETLLFSAKFRLKQMTAKERELRVENLMQELGLFHVADSFVGNEENRGVSGGERKRVSIGVDMIHNPPILVLDEPTSGLDSTSAFHVIELLSSMAKSKQRIVILSIHQPSYRIMQYISKFLILSHGSVVHNGSLESLEETISNLGFQIPLQLNPLEFSMEIIQSLEDSRSSIIDDKNETSFPSLIWQEEEKSGSGIFQTQNERESYGNLCYVNLMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVVMKEASRGAYRISSYMIANTVIFLPFLFVVSVLFAVPVYWIVGLNPSLSSFSFFTFVVWLIVLMASSLVLFLSSVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWDVGNECFSEQGSSSSKCLVTGFDVLKSRGIEKDNRWMNVGIMVAFFVFYRLLCWIILARKASKTTL* 649
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4318 648 Pfam ABC transporter 80 233 IPR003439 GO:0005524
Psa5g4318 648 Pfam ABC-2 type transporter 263 328 IPR043926 GO:0140359
Psa5g4318 648 Pfam CDR ABC transporter 590 639 IPR010929 GO:0005524|GO:0016021|GO:0042626|GO:0055085
Psa5g4318 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 297 IPR027417 -
Psa5g4318 648 ProSitePatterns ABC transporters family signature. 205 219 IPR017871 GO:0005524
Psa5g4318 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 2 641 - -
Psa5g4318 648 Gene3D - 62 307 IPR027417 -
Psa5g4318 648 Pfam ABC-2 type transporter 373 581 IPR013525 GO:0016020|GO:0140359
Psa5g4318 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 306 IPR003439 GO:0005524
Psa5g4318 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 641 - -
Psa5g4318 648 SMART AAA_5 89 291 IPR003593 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa5g4318 Psa-Chr5 358193423 358195369 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4318 62 293 Calmodulin-binding Proteins AT2G36910 29.915 7.35e-13 70.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4318 K05681 - gmx:100783883 964.526