Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4306 ATGAATATCAAAGAACTTCGTGAAGGTGCTGGATACAGCAACGTCCATATTTTTACCTACAACGAATTGAGGCTTTCCACCAAGCAGTTTCGTCCCAATTTCATTCTTGGAGAAGGTGGATTTGGTGTTGTGTATAAAGGTGTCATTGATGATAGTGTTAGAGCCGGTTATAAATCCACTGAAGTCGCTATTAAGGAACTCAATCGCGAAGGGTTTCAAGGCGATAGGGAATGGCTTGCTGAAGTTAACTATTTGGGTCAATTCAGTCACCCGAATCTTGTGAAGCTCTTTGGGTACTGCTGTGAGGATGAACACCGCTTGTTGGTCTATGAGTACATGGCTAGTGGGAGCTTGGAGAAACATCTTTTCCGCAGTAAGCTTCACATATTTTACTTTTGA 399 0.4236 MNIKELREGAGYSNVHIFTYNELRLSTKQFRPNFILGEGGFGVVYKGVIDDSVRAGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLFGYCCEDEHRLLVYEYMASGSLEKHLFRSKLHIFYF* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4306 132 SUPERFAMILY Protein kinase-like (PK-like) 12 126 IPR011009 -
Psa5g4306 132 ProSitePatterns Protein kinases ATP-binding region signature. 36 65 IPR017441 GO:0005524
Psa5g4306 132 Pfam Protein tyrosine and serine/threonine kinase 36 125 IPR001245 GO:0004672|GO:0006468
Psa5g4306 132 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 2 125 - -
Psa5g4306 132 Gene3D Phosphorylase Kinase; domain 1 5 112 - -
Psa5g4306 132 ProSiteProfiles Protein kinase domain profile. 30 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4306 132 PANTHER OS01G0588500 PROTEIN-RELATED 2 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4306 Psa-Chr5 356977630 356978656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4306 18 123 Glycoside Hydrolase AT3G07070 47.170 2.46e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa5g4306 PK_Tyr_Ser-Thr 1.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4306 - - gmx:100800465 239.195