Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4297 ATGGGTAAGGAAAAGGTTCATATTAACATTGTGGTTATTGGCCATGTCGACTTTGGGAAGTCAACTACTACCGATCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGATTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAAAGGGAAAGAGGTATCACTATTGATATTTCCTTATGGAAGTTTGAGACAACTAAGTACTACTGTACCGTCATTGATGCTCCTAGTCACAAGGATTTTATTAAGAACATGATTACTGGAACATCACAAGCTGATTGTGTTGTTCTCGTAATTGATTCCACTACTGGTGGTTTTGAGGCTGGTGAAGAACCAAAGATTGCGGTAGCTATAATTGATCTTTTTCACTTATTTCCTCCCGCTGCTTCTAAGTTCCTCGATGAACTTATAACCATGACAATTGATTTGGAAGGAGCTCTTCCTCCTTGA 501 0.4032 MGKEKVHINIVVIGHVDFGKSTTTDHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDISLWKFETTKYYCTVIDAPSHKDFIKNMITGTSQADCVVLVIDSTTGGFEAGEEPKIAVAIIDLFHLFPPAASKFLDELITMTIDLEGALPP* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4297 166 Pfam Tra1 HEAT repeat ring region 123 165 IPR046805 -
Psa5g4297 166 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Psa5g4297 166 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Psa5g4297 166 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Psa5g4297 166 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Psa5g4297 166 PANTHER TRANSLATION FACTOR 1 126 - -
Psa5g4297 166 Gene3D - 1 141 IPR027417 -
Psa5g4297 166 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 1 126 - -
Psa5g4297 166 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Psa5g4297 166 Pfam Elongation factor Tu GTP binding domain 6 121 IPR000795 GO:0003924|GO:0005525
Psa5g4297 166 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 166 IPR000795 GO:0003924|GO:0005525
Psa5g4297 166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 128 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4297 Psa-Chr5 356578303 356579417 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4297 1 126 Eukaryotic Initiation Factors Gene Family AT1G07930 93.651 8.19e-83 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4297 K03231 - ncol:116247311 246.514