Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4295 ATGGCTAAGGAAAAGGTTCATATTAACATTGTGGTTATTGGCCATGTCGACTCTGGGAAGTCAACTATTACCGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGATTTGAGAAAGAAGTTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTTGAGAAGCTCAAGGCTGAAAGGGAAAGAGGTATCACTATTGATATTGCCTTGTGGAAGTTTGAAATAACTAAGTACTACTGTACCGTCATTGATGCTCCTGGTCACAGGGATTTTATTAAGAACATGATTACTGGAACATCACAAGTTGATTGTGTTGTTCTCGTAATTGATTCCACTACTGGTGGTTTTGAGGCTGGTGAAGAACCAAAGATTACGGATGTACGTTCCTGCCAACAACAGCGGAAAGCAAATCCTTTCAATGTCGACGATATTTTATGCACAACTGCTGAAGCATTGGGAACTGAGAAAGAACACTTTCTTTTGTTGTTAGTTTTGCTGTCAAATGTGAGGTCTCATGGTGATATCAATACTCTAACCGCCGCAGCTGCCACAGCTCTAAGGGTTGCAACAACGTTGGAAGCAAGGGCATTGAAAGAGATGTGGAGCATTAATGTCGTTATGCCGTTAGAGAAGAGCATGAGATTTGGAATATGCAGCGGTACTTGCAGCCAAGAGCTTCTTACTCAAGGAACCGGATCGCTCAACGCGCCTATGAAGACATGTTCTCTCATTGGGCATGCATTACAATTTGGTTTGCTTTTTGTACAGAAGACATGCATTTATCACAGTTCAAATCCAAGTTCACTGAAGGAGGGAGGTGAGCATAAGCCTGCAAACTGGCTAGAGATGAACCAATCAGGAGTTGATGAAATTGGGGATCAATTGTTAGATCACTACAATGATCTCCCAGATATGGACATGGACCCCATGGAAGCCACCGGCATTTCTGTATTGTTGAAAAGGTCCAGAAACAACAAAGGACCTATTGTTCGGGCAAGGACATTTACTGCCACAACTATATCTTATGATGACCTGCAGTTGAGTGGCCGGAAATTGGATGCAGACTGCGGACATGACTTAAGGATTAAGCCTCCAAGCACCGCTGAAAATACAATGATAGATTTAATTCAAGCTTCTCCTATCGATTCAACTTTTGTTGACAAAGAAAAACTAGGAAACGATGATAGTAGTAAAGGAAATAATGTATGCAGCTCAGAACTTTTAAGCCACACAACTAGTGTTCGACCTGATGACAATTTAGTGACATCATTTCCAGATCCCGGGGATTGTATTTCAATTGAAAATGTTGAAGACCATTTAGATATTGCAAGGAGTGTCTCAAATACAGAAACATCGGTTAGGACTCTAGAGTCATCATGTCATGAGAATCTTGATGTGCAGAGTTATGATGTTAACGACCTGAATGCTTCGTCTTTGCTTCACATAACAACTGAAGTTGAAGTTGAAAAAGATCGTCGAACTCAGAAGAGCATACTCCGTGTTGTTGGCCAGATAGAAATAAGGGTTGATTTAATGGATGCCCACTGCCAGCTGAAATCAGAAGTATTATTAAAGGGGATACCACAAGCAGAAGAAAATGGAACTGAGAAGGGCATTTCTCCAAAGAATCAACAAACGTTGTCTCAAATACCTGTTACTGCAAGATCCGGTGATTATATTATATCATCCAGCCATGACCGGATAACTAGAATTTATGCGCCGTGGAAAGCGGAAGCTCCTCACAAAAATGGAGAACTTTGGTATGAGATCTCCTGCCCTCAGGTTCATGGTCATGATATCAACTGCATGACAGTTGTTCAGGGTAAGAGGAATTATCATCAGTAA 1866 0.4148 MAKEKVHINIVVIGHVDSGKSTITGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLEKLKAERERGITIDIALWKFEITKYYCTVIDAPGHRDFIKNMITGTSQVDCVVLVIDSTTGGFEAGEEPKITDVRSCQQQRKANPFNVDDILCTTAEALGTEKEHFLLLLVLLSNVRSHGDINTLTAAAATALRVATTLEARALKEMWSINVVMPLEKSMRFGICSGTCSQELLTQGTGSLNAPMKTCSLIGHALQFGLLFVQKTCIYHSSNPSSLKEGGEHKPANWLEMNQSGVDEIGDQLLDHYNDLPDMDMDPMEATGISVLLKRSRNNKGPIVRARTFTATTISYDDLQLSGRKLDADCGHDLRIKPPSTAENTMIDLIQASPIDSTFVDKEKLGNDDSSKGNNVCSSELLSHTTSVRPDDNLVTSFPDPGDCISIENVEDHLDIARSVSNTETSVRTLESSCHENLDVQSYDVNDLNASSLLHITTEVEVEKDRRTQKSILRVVGQIEIRVDLMDAHCQLKSEVLLKGIPQAEENGTEKGISPKNQQTLSQIPVTARSGDYIISSSHDRITRIYAPWKAEAPHKNGELWYEISCPQVHGHDINCMTVVQGKRNYHQ* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4295 621 Gene3D - 1 172 IPR027417 -
Psa5g4295 621 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 1 126 - -
Psa5g4295 621 PANTHER TRANSLATION FACTOR 1 126 - -
Psa5g4295 621 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 121 IPR000795 GO:0003924|GO:0005525
Psa5g4295 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 143 IPR027417 -
Psa5g4295 621 Pfam Elongation factor Tu GTP binding domain 6 121 IPR000795 GO:0003924|GO:0005525
Psa5g4295 621 Pfam Auxin canalisation 155 218 IPR008546 -
Psa5g4295 621 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Psa5g4295 621 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Psa5g4295 621 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Psa5g4295 621 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4295 Psa-Chr5 356523957 356529140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4295 1 126 Eukaryotic Initiation Factors Gene Family AT1G07930 92.857 1.57e-77 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4295 K03231 - dct:110112601 244.588