Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4294 ATGGACAAACATTCCGGGGATTCTTTGCCCGCTCGTGGTACTGCAGGGCTGTCTGGGATTTCCTCGCTAAATATTCCAAATAAAGCAGGAAGCAGTGCATGGAGAATACCGAACGCGACTGATGTATTTCAAGATTCTAATGATGTTAGCTTGTTTTCTACTTCATTGCCTGTTCTTCCGCATGAAAATTTAAATTTGACCGATTCTGAACAATATGGTCAACTGGTGGATGATAACTTGCTAACAGTAGATAAAGTTCATAAAGAGGACGAGGGGCATGATCCTTTTGATAACTTCGAAATTAATGCCATTGGAAACATGCTACCTGATGATGAAGACGAGCTTTTAGCTGGGATAATGGACGATTTTGATCTTAGCGGGTTACCAAATCAACTGGAGGATTTGGATGAAAACGATCTGTTTGTTAATGGAGGTGGATTTGAAATGGATTTTGAATCCCAAGAGGGTCTTAGTTTTGGTGTTTCAAAGATGAGTATATCAGATGGAATTGCTTCTAATGGCATTGGACCATATGCGATTCCGAATGGTGTAGGAACAGTGGCTGGAGAGCATCCCTACGGAGAGCATCCATCGAGGACATTGTTTGTTCGGAACATCAATAGTAACGTTGAGGATTCTGAATTAAGAACACTATTTGAGCAATACGGGGATATCAGAACTTTGTACACTGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGATATACGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGGAAACTCGATATTCATTTTTCAATTCCTAAGGATAACCCTTCGGAAAAAGATATAAACCAAGGAACCCTCGTAGTGTTCAATTTAGATCCATCGGTATCAAATGACGACCTTCGTCAGATATTCGGGGTTTATGGTGAGGTCAAAGAGATCAGGGAAACACCGCACAAGAGACACCATAAATTTATCGAGTTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCGTTAAATCGAAGCGACATTGCTGGCAAACGCATAAAACTTGAACCTAGCCGTCCTGGTGGAGCCCGCAGAAACTTGATGCAACAACTGAGTCAAGAATTGGAACAAGATGAAGTTCGAACTTTCAGGACTCAAGTAGGTTCACCTATAGCCAGTTCTCCTCCTGGTAGCTGGGCACAATTTAGTAGTCCGGTTGAACCTAATCCGTTAGGTTCTTACAGCAAGTCCCCTGGTTTGGGTCATGCCAGCCCGATTAATATCAATCATTTGTCCGGATTGGCTGCAATTCTTTCCCCGCACGCATCAACCTCTCCCAAAATTGCGCCGATTGGCAAGGACCCTGGAAGAGTTTCAAATCAGATGTTTGCCAGCTCTGGAGGATCAACACATGGAGTAGCTTTTCAACATTCTATCTCCTTTCCTGAAAAAAATATAAATGCAAGTCCTAGGCCGATATCTGCTTTTGGTGAATCAAATTCAAATTCATCGAGTGTTGGAACATTGTCTGGTCCCCAATTTCTTTGGGGAAGCCCGACTCCTTACTCGGAGAATTCAAACACATCTGCCTGGTCTTCGTCTTCCGTTGGGCATCCATTTACATCTAGTGGCCAAAGGCAGGGTTTCCCGTACACAGGTCATCGCAATCCTTTTCTCGGCTCCCAGCATCACCATCATGTAGGATCTGCTCCATCCGGCCTTCCTCTTGAACGAAATTTCAGATACTTTCCAGAATCACCGGATACCTCTCTCATGAGCTCCATTGAATTTGGGAATTTAAATCACGGCAATGGGAATTTTATGATGAACATGGGCTCTCGTCCATCTGTCGGGCATGGTATTGGCCTTTCAGCAACTTCCAGTGAAATCGGTTCGCCTAATTTCGGAATGATGTCCGTACCTGGTCATGGTTCCTTGTTCATTGGAAATAGTTTGTACGCTGGACCTGGACTATCTAGCATCGAGGGATTTGGTGAACGTGGACGAAATCGGCGACCTGACAATAATGTGAACCAAATCGAAAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCATCAGTGGTGAAGATACAAGGACAACTCTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTACTCGCCGCAATTGATGAGAATCACCAGGGGACTTACGACTTCCTCTACTTGCCAATTGACTTTAAAAATAAGTGTAATGTCGGTTACGCATTCATCAATATGGTCTCTCCTTCACACATCGTCGCCTTCTATAAGGCCTTTAACGGAAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAACTCAAGCTTAATGAATGAGGATAAGCGATGTCGGCCAATCCTTTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACACTTTCTATCCAGCAACTTGAATATATGTATTCGTCAACCAGACGGGTCTTACTCGGGTGATATGTTGGAGAGCCCGAAGAGCTATTCAGATGAAAATCTGGAAAAAGATTGA 2574 0.432 MDKHSGDSLPARGTAGLSGISSLNIPNKAGSSAWRIPNATDVFQDSNDVSLFSTSLPVLPHENLNLTDSEQYGQLVDDNLLTVDKVHKEDEGHDPFDNFEINAIGNMLPDDEDELLAGIMDDFDLSGLPNQLEDLDENDLFVNGGGFEMDFESQEGLSFGVSKMSISDGIASNGIGPYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEVRTFRTQVGSPIASSPPGSWAQFSSPVEPNPLGSYSKSPGLGHASPININHLSGLAAILSPHASTSPKIAPIGKDPGRVSNQMFASSGGSTHGVAFQHSISFPEKNINASPRPISAFGESNSNSSSVGTLSGPQFLWGSPTPYSENSNTSAWSSSSVGHPFTSSGQRQGFPYTGHRNPFLGSQHHHHVGSAPSGLPLERNFRYFPESPDTSLMSSIEFGNLNHGNGNFMMNMGSRPSVGHGIGLSATSSEIGSPNFGMMSVPGHGSLFIGNSLYAGPGLSSIEGFGERGRNRRPDNNVNQIESKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKSYSDENLEKD* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4294 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Psa5g4294 857 CDD RRM1_MEI2_like 198 274 IPR034453 -
Psa5g4294 857 Pfam RNA recognition motif 2 697 793 IPR007201 -
Psa5g4294 857 PANTHER PROTEIN MEI2-LIKE 2 15 850 - -
Psa5g4294 857 Gene3D - 284 380 IPR012677 -
Psa5g4294 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Psa5g4294 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Psa5g4294 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Psa5g4294 857 CDD RRM3_MEI2_like 700 785 IPR034454 -
Psa5g4294 857 CDD RRM2_MEI2_like 283 353 - -
Psa5g4294 857 SMART rrm1_1 285 353 IPR000504 GO:0003723
Psa5g4294 857 SMART rrm1_1 200 268 IPR000504 GO:0003723
Psa5g4294 857 SMART rrm1_1 699 775 IPR000504 GO:0003723
Psa5g4294 857 MobiDBLite consensus disorder prediction 838 857 - -
Psa5g4294 857 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 850 - -
Psa5g4294 857 Gene3D - 188 283 IPR012677 -
Psa5g4294 857 Gene3D - 691 786 IPR012677 -
Psa5g4294 857 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Psa5g4294 857 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4294 Psa-Chr5 356508504 356513274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4294 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 8.43e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4294 - - gmx:100812324 1456.43