Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4289 ATGAATCACATTCTTCATTATGATGTCAAGTGCTCAAATATCTTCTTGATGAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTGCGGATGATCTCGCTTCCTCGGTTGTGGGAACTCCTAGCTATATGTGCCCTGAGCTCCTTGCAGATATATCTTATGGCTCTAAATCAGATATTTGGTCATTGAGATGTTGTGTATATGAGCCGGCGGGACATATGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATCAAGACTAGCAAGTCCATAGTGGCTCCACTGCCGAGAAAAATATTCCAGTGCATTTTGAAGTCTGGTAAAAAGTCATGCCTTGCGAAAGGAACATTCGAGCATGTCACTGGGTTCAGCCTTTTCCAACAGTTCTACTGGGTTATCTGA 423 0.4208 MNHILHYDVKCSNIFLMKDRDIRLGDFGLAKMLTADDLASSVVGTPSYMCPELLADISYGSKSDIWSLRCCVYEPAGHMPAFKAFDIQALIIKTSKSIVAPLPRKIFQCILKSGKKSCLAKGTFEHVTGFSLFQQFYWVI* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4289 140 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
Psa5g4289 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4289 140 SUPERFAMILY Protein kinase-like (PK-like) 2 104 IPR011009 -
Psa5g4289 140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 4 16 IPR008271 GO:0004672|GO:0006468
Psa5g4289 140 PANTHER SERINE/THREONINE-KINASE NEK4 1 105 - -
Psa5g4289 140 Pfam Protein kinase domain 2 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4289 140 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4289 Psa-Chr5 354548692 354549717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4289 2 126 MAP Kinase Kinase Kinase AT5G67080 31.429 5.55e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa5g4289 Pkinase 7.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4289 K08857 - jre:108995248 186.037