Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4263 ATGGTGAGGTCTGTAAGTTGTGAAAAAAATAGTGTGGTGAAAAAGGGTGTATGGATCACAGAAGACGATGTCTCTGGTAACTGGAATTCAGTCCCAAAAAAAACAGGTATAAAGAGGTGTGGAAAAAATTGCAGACTTAGGTGGAGTAATAACAACAACATGGGTGATGATGATAAGTTATTCACATCGGAAGAAGAAGATCTTATAGTTAAGCTTCATGCTGCCATAGGTAGTAGGTGGTCAATCATAGCACAACAACTTCCTGGAAGAACAGACAGTGATGTCAAGAACAACTGGAACACAAAGCTGAAAAAGAAACTGTCACAAATGGGGATAGATCCTGTTACACACAAGCCTTTTTCTAAACTCATTGCTGACTATGGAAATATTGGTGCTAAACAAGACTTTAGAAATGTCAATCTAATATTAAAATCAGATCCCAAATTGGATCTTTCACTCTTCCAAAATATGCCAATAACAAAAATAAAATATGACACCAATAATGTTGCACCATTTAGTTGGAATGATTTTCTTCTACAAGATGCTTTTGCACCACCACTTACTAATAACCAAGATCAAACATTATTTTCAAATGATATTATGGTCTCCAAATTACAATTAGAGAAAAACAAAGAGATCGTATCGTCGTCATCCTCCTCCTCATCCTCAGACATTTCTTTTGTGGAAGCAATACTCGATCAAGAAAATGAGATGTTTTTAAGCTTTCCAGAACTTTTGGAGGAACCATCCCATTACTGA 759 0.3597 MVRSVSCEKNSVVKKGVWITEDDVSGNWNSVPKKTGIKRCGKNCRLRWSNNNNMGDDDKLFTSEEEDLIVKLHAAIGSRWSIIAQQLPGRTDSDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGAKQDFRNVNLILKSDPKLDLSLFQNMPITKIKYDTNNVAPFSWNDFLLQDAFAPPLTNNQDQTLFSNDIMVSKLQLEKNKEIVSSSSSSSSSDISFVEAILDQENEMFLSFPELLEEPSHY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4263 252 CDD SANT 61 103 IPR001005 -
Psa5g4263 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 107 IPR017930 -
Psa5g4263 252 SMART sant 57 105 IPR001005 -
Psa5g4263 252 SMART sant 14 54 IPR001005 -
Psa5g4263 252 Pfam Myb-like DNA-binding domain 61 101 IPR001005 -
Psa5g4263 252 ProSiteProfiles Myb-like domain profile. 61 103 IPR001005 -
Psa5g4263 252 Gene3D - 60 121 - -
Psa5g4263 252 PANTHER F14D16.11-RELATED 1 135 - -
Psa5g4263 252 PANTHER F14D16.11-RELATED 163 252 - -
Psa5g4263 252 PANTHER F14D16.11-RELATED 163 252 - -
Psa5g4263 252 PANTHER F14D16.11-RELATED 1 135 - -
Psa5g4263 252 SUPERFAMILY Homeodomain-like 38 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4263 Psa-Chr5 350244227 350245677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4263 1 246 MYB Transcription Factor Family AT3G28470 35.463 1.72e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g4263 Myb_DNA-binding 4.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4263 K09422 - gmx:100795381 215.312