Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4257 ATGTTTGGGCCTAGGCTCGCTTCAACTCAAAACCATTTGAAACCATCCTCCCTTAAAAAGCCAAAACAGAACGTAACACAATTCTTCTACTCACAGGCGCGAGAGATCAACGAAGAGCAACCCTCTGCTCGGCCGAACAGCACCATGGTTCACGTCTCCTTCTACCGCAACTATGGGAAAACATTCAAGAAACCTCGTCGTCCATACGAGAAGGAGCGTTTAGACGCTGAGTTGAAGCTCGTCGGTGAGTACGGACTCAGGTGCAAACGTGAACTCTGGAGAGTGAAGTACGCTCTCAGTCGAATCAGGAACAATGCTAGAAACCTTCTCACTCTTGATGAGAAGAATCCTCGTAGGATTTTTGAAGGTGAAGCTTTGCTCCGAAGAATGTTTCGTTATGGGTTACTTGATGAGACACATAATAAGCTTGATTATGTTCTTGCTTTAACTGTTGAGAATTTTCTGGAACGTCGCCTTCAGACACTTGTTTTTAAATCTGGTATGGCGAAATCTATTCATCATGCTAGGGTTCTCATCAGACAGAGGCACATCAGGGTTGGAAGACAGGTTGTTAACATCCCATCTTTCATGGTGAGAGTTGACTCACAGAAGCATATTGACTTTTCACTAACAAGTCCCCTTGGTGGTGGACGTCCCGGAAGGGTGAAGCGAAAGAACCTCAAGGCTGCTGCCAAGAACCTCATCATTTTCATCATCACTATCAGTCTCATAGACCTACATCATTTTCATCATCACTATCAGTCTCATAGACCTTGGTAA 780 0.4474 MFGPRLASTQNHLKPSSLKKPKQNVTQFFYSQAREINEEQPSARPNSTMVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVKYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETHNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNLKAAAKNLIIFIITISLIDLHHFHHHYQSHRPW* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4257 259 ProSiteProfiles S4 RNA-binding domain profile. 157 231 - -
Psa5g4257 259 CDD S4 157 201 - -
Psa5g4257 259 SMART Ribosomal_S4_2 56 156 IPR001912 GO:0019843
Psa5g4257 259 Pfam S4 domain 157 200 IPR002942 GO:0003723
Psa5g4257 259 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 53 233 - -
Psa5g4257 259 Gene3D - 156 213 IPR036986 GO:0003723
Psa5g4257 259 TIGRFAM uS4_arch: ribosomal protein uS4 59 214 IPR005710 GO:0003735|GO:0006412|GO:0015935
Psa5g4257 259 SMART s4_6 157 228 IPR002942 GO:0003723
Psa5g4257 259 Pfam Ribosomal protein S4/S9 N-terminal domain 56 156 IPR001912 GO:0019843
Psa5g4257 259 ProSitePatterns Ribosomal protein S4 signature. 155 179 IPR018079 GO:0019843
Psa5g4257 259 PANTHER 30S 40S RIBOSOMAL PROTEIN 53 233 IPR022801 -
Psa5g4257 259 SUPERFAMILY Alpha-L RNA-binding motif 60 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4257 Psa-Chr5 346992121 346993920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4257 49 232 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.761 1.72e-122 345