Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4223 ATGTCTAGCAGGAGGTCACGGTCTAGGCAAACAACTAGTTCAAGGAATATCACCGACGATCAGATCCACGATCTTGTCTCCAAGTTGCAGCAGCTTCTTCCTGAGATTCGTAATAGGACCTCTGACAAGGCTTCAGCTTCGAGGGTGTTGCAGGAGACATGCAACTATATTAGAAATTTGCACAGAGAGGTCGACGACCTTAGCGAACGTTTATCTGAGCTACTGGCTACAACAGATACAGCACAAGCAGCCATCATTAGAAATTTACTTATGCAATAG 279 0.4516 MSSRRSRSRQTTSSRNITDDQIHDLVSKLQQLLPEIRNRTSDKASASRVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4223 92 Coils Coil 57 77 - -
Psa5g4223 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Psa5g4223 92 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g4223 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Psa5g4223 92 CDD bHLH_AtPRE_like 17 77 - -
Psa5g4223 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Psa5g4223 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Psa5g4223 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Psa5g4223 92 Gene3D - 15 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4223 Psa-Chr5 339078099 339079788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4223 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 4.50e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g4223 HLH 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4223 - - gmx:100527636 152.14