Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4222 ATGGCAAGCTCTATTCTCAGAAGATCTTCTTCCATATTCTCACGGTGTTTCTTCGCCGCCGTAACTTCCATTGAACCACTTCTGTCACGTCGCAACAGCCACGCCTTGTTCTCCGCCGCCTACGGCAAAGGAGACAGGCTGTTTCACGCCAAATCTGGACCGTTGAATTTCCACTCGTCGCTGGTTTCTCGTGGTGCGCAACTTGCTGTGGATTACGACGACGACGCACCACACAATGAAGGGGACGAAGGACTGGAGATCGCGGAGCTTGGGATTTCTAACGAGATCGTGAATGCTCTTGCAAAGAAAGGGATCACGAAGCTCTTCCCTATTCAGAAAGCTGTGCTGGAACCTGCTATGCAAGGGAGGGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTCGGGATACCTATCTTGGATAAGATTATTAAGTTTAACGCTAAGCATGGGAAAAGAAGAGATCCTTTGGCTTTGGTGTTGGCACCGACCAGGGAACTTGCACGGCAGGTTGAAAAGGAATTCAATGAGGCTGCACCTAACTTGGAAACAGTTTGTCTTTATGGGGGTATGCCTATTCAGCAACAAATCGGCCAACTTGGTGGTGGCGTAGATATTGTAGTTGGCACACCTGGACGTGTTATTGATCTTCTCAAAAGGGGTTCCCTCAAATTGAAGGATGTTAACTATTTAGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGATTTCAAGAAGCGGTGGAGATTATTTTGCAGAAGTTGCCTTCAAAGCGTCAAACTGTTATGTTCTCCGCAACAATGCCTTCTTGGATAAAGACTATTACACGCAAATACCTGAACAATCCCTTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCAATGTACTCTATTGCATCTAACGCCTATGCTAAAGCAGGAATTCTAGCACCTCTTATAAATGAACATGCTAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGACTATCACATATAATGTCAAAAAGCGTTAAATGTGAAGCTTTACATGGAGATATTTCACAAACTCAGAGAGAAAGAACTCTTACTGGCTTTAGAAACAACTATTTCAATGTTTTAGTGGCAACCGATGTTGCTTCCCGTGGGCTCGATATACCAAATGTTGATCTTGTAATACATTATGAACTTCCAAATTCTTCAGAGATATTTGTTCATCGAACTGGACGAACGGGACGTGCTGGGAAGAAAGGGACTGCTATTCTTGTCCATACAGAAAATCAATCCAGAGCTGTACAATCAATTGCACGAGATGTTGGTTGTACATTCACAGAGTTACCTAAGATCGCTGGTGAGAGTGGATCAGAAGACATGTTTGGTAGCACGAGTGGGAGTCGATATGGCTCTTCAGGAGGTAGGGATCGTCGATCAGGCGGCTCGGGTATTGGTGGTAGTTCTGGATTTGGCCGAACTAGCAATGTTAAATCCAGTCGCTTTAGCAGCTCTGGTTCAAGTCAGTCAGAAGGTGGCTTTGGGGGATTTTCTGGTAAAACAGATAAATATGGTGGTGGAGGATTTGGCAATTCAGGTCGTTCTAGTGGCTTTGGAAATTTTGGATTGGGTAAATCTGGGTCATATGGGGGAAGAAATTGA 1680 0.4429 MASSILRRSSSIFSRCFFAAVTSIEPLLSRRNSHALFSAAYGKGDRLFHAKSGPLNFHSSLVSRGAQLAVDYDDDAPHNEGDEGLEIAELGISNEIVNALAKKGITKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNAKHGKRRDPLALVLAPTRELARQVEKEFNEAAPNLETVCLYGGMPIQQQIGQLGGGVDIVVGTPGRVIDLLKRGSLKLKDVNYLVLDEADQMLQVGFQEAVEIILQKLPSKRQTVMFSATMPSWIKTITRKYLNNPLTIDLVGDSDQKLADGISMYSIASNAYAKAGILAPLINEHAKGGKCIVFTQTKRDADRLSHIMSKSVKCEALHGDISQTQRERTLTGFRNNYFNVLVATDVASRGLDIPNVDLVIHYELPNSSEIFVHRTGRTGRAGKKGTAILVHTENQSRAVQSIARDVGCTFTELPKIAGESGSEDMFGSTSGSRYGSSGGRDRRSGGSGIGGSSGFGRTSNVKSSRFSSSGSSQSEGGFGGFSGKTDKYGGGGFGNSGRSSGFGNFGLGKSGSYGGRN* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4222 559 Gene3D - 86 294 IPR027417 -
Psa5g4222 559 SMART ultradead3 104 307 IPR014001 -
Psa5g4222 559 Pfam DEAD/DEAH box helicase 109 278 IPR011545 GO:0003676|GO:0005524
Psa5g4222 559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 290 IPR014001 -
Psa5g4222 559 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 113 IPR014014 GO:0003724
Psa5g4222 559 PANTHER RNA HELICASE 3 549 - -
Psa5g4222 559 SMART helicmild6 344 424 IPR001650 -
Psa5g4222 559 MobiDBLite consensus disorder prediction 493 521 - -
Psa5g4222 559 Pfam Helicase conserved C-terminal domain 319 424 IPR001650 -
Psa5g4222 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Psa5g4222 559 CDD DEADc 96 291 - -
Psa5g4222 559 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 549 - -
Psa5g4222 559 MobiDBLite consensus disorder prediction 463 525 - -
Psa5g4222 559 MobiDBLite consensus disorder prediction 465 479 - -
Psa5g4222 559 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 463 IPR001650 -
Psa5g4222 559 CDD SF2_C_DEAD 316 431 - -
Psa5g4222 559 Gene3D - 306 467 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4222 Psa-Chr5 338380054 338385654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4222 73 456 Eukaryotic Initiation Factors Gene Family AT3G19760 33.418 8.25e-66 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4222 - - gmx:100802553 683.33