Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4215 ATGGGAGGTGTGGAAGATGAAGAACCAGCTTTAAAAAGAACGAAATTGTCAGCTACAGGATATTTTAGTCTTTCTAACTGTTCGTCTTCTGTGGAGTGCGTTGTAGGATCTTCAAGTGACTTGATGGCTCGCCCCCTGTCAAATGAAGGGGACGATGGAGTTGTTGGTTCAAAAGGGATTATCAAAAGAGGGGAGTTTGTAAGGATAATCACGGAGGCATTGTATTCTCTTGGTTACCAAAAGAGTGGGGAAAACCTAGAAGAGGAATCTGGCATACATTTGAATTCGTCTGTGGTAAATCTGTTTAAGCAGCAGATACGTGCTGGGGATTGGGAGGAAAGTTTAGCTACATTGAGAAATATTGGTCTAGAAGATGAAAGCGTTGTTAGGGATGCTTCTTTTTTAATATTGGAGCAGAAATTTTTCGAGCTTCTTGATGGGGATAAGGCCGCGGATGCATTGAATACATTGAGGAATGAGATTACACAACATTGTGTTGATAGTACTAGAATTCGTGAACTTTCTTCCTGTTTAGTGTCTCCGCGTGGCCAAGATGGTTCTTCTCGGTCGAAACTGCTAGAGAAACTACAAAAACTGATTCCTCCGACTATAATGATACCTGAGAAAAGATTGGAACAGCTAGTTGAACAAGCCATCATCTTGCAACGAGAAGCTTGCTCATTTCACAATATATTGGATAAGGAGATGTCTTTGTATTCAGATCACCACTGTGGAAAAAGTCAGATACCATCTAGAACATTACAGATATTAGAAGCCCATGATGATGAAGTATGGTTTGTACAATTTTCACATGATGGGAAATATTTAGCCACAGCATCAAAAGATCAAACTGCAATCATTTGGGAGGTTGCTACAGATGGTGGGGATGGACTGTCAATGAAGCATAGACTATTTGGTCACCAAAAACCTGTTTCATCCGTTTCATGGAGTCCTAATGGCCAGGAGCTTCTCACATGTGGAGTGGAGGAAGCTGTTATGCGTTGGGATGTCTCTACGGGTGAGCGCCTGCAAGTTTATGAAAAGAATGGTTCTGGCTTTATCTCCTGTGCATGGTTTCCTTGTGGAAAGTATGTACTTTCTGGTCTCAGTGACAAGAGCATATGCATGTGGGAATTAGATGGGACAGAAGTGGAGTCTTGGACAGGACAAAAAACCCTCAAGATTTCTGATTTGGAAATAACTGGTGATGGGGAACATCTTAGTATTTGTAAAGAGAATGCAATACTGTTCTTCAATAAAGAAACAAAGCATGAGAGATTTATCGAAGAGGATCAGGCGATAACTTCATTCTCTCTGTCAAAGGATAGTAGATTCTTGCTGGTTAATCTTTTGAACCAAGAAATACATCTTTGGAATATAGAAGGTGACCCTAAGCTTGTTAGCAAGTATAAAAGTCACAAACGCTCCCGGTTTATCATTAGATCTTGCTTTGGTGGGCACGAGCAATCATTTATTGCTAGTGGAAGTGAGGATTCACAGGTTTACATATGGCACAGAAGCTCAGGGGAATTGGTAGATGCATTGCCTGGCCATTCTGGAGCCGTTAACTGTGTGAGCTGGAATCCAGCTAACCCCCATATGTTGGCCTCAGCCAGTGATGACCGCACAGTCCGGATATGGGGCTTAAAGCGTCTGGATGTGAAGCACCCAAATACATACAGCAACGGCAACAACCATCACAGCAATGGTGGGAAACTTAGATGA 1725 0.4209 MGGVEDEEPALKRTKLSATGYFSLSNCSSSVECVVGSSSDLMARPLSNEGDDGVVGSKGIIKRGEFVRIITEALYSLGYQKSGENLEEESGIHLNSSVVNLFKQQIRAGDWEESLATLRNIGLEDESVVRDASFLILEQKFFELLDGDKAADALNTLRNEITQHCVDSTRIRELSSCLVSPRGQDGSSRSKLLEKLQKLIPPTIMIPEKRLEQLVEQAIILQREACSFHNILDKEMSLYSDHHCGKSQIPSRTLQILEAHDDEVWFVQFSHDGKYLATASKDQTAIIWEVATDGGDGLSMKHRLFGHQKPVSSVSWSPNGQELLTCGVEEAVMRWDVSTGERLQVYEKNGSGFISCAWFPCGKYVLSGLSDKSICMWELDGTEVESWTGQKTLKISDLEITGDGEHLSICKENAILFFNKETKHERFIEEDQAITSFSLSKDSRFLLVNLLNQEIHLWNIEGDPKLVSKYKSHKRSRFIIRSCFGGHEQSFIASGSEDSQVYIWHRSSGELVDALPGHSGAVNCVSWNPANPHMLASASDDRTVRIWGLKRLDVKHPNTYSNGNNHHSNGGKLR* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4215 574 Pfam WD domain, G-beta repeat 343 377 IPR001680 GO:0005515
Psa5g4215 574 Pfam WD domain, G-beta repeat 511 547 IPR001680 GO:0005515
Psa5g4215 574 Pfam WD domain, G-beta repeat 303 335 IPR001680 GO:0005515
Psa5g4215 574 Pfam WD domain, G-beta repeat 466 504 IPR001680 GO:0005515
Psa5g4215 574 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Psa5g4215 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 292 - -
Psa5g4215 574 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Psa5g4215 574 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Psa5g4215 574 PRINTS G protein beta WD-40 repeat signature 492 506 IPR020472 -
Psa5g4215 574 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Psa5g4215 574 Gene3D - 245 511 IPR015943 GO:0005515
Psa5g4215 574 Gene3D - 512 563 IPR015943 GO:0005515
Psa5g4215 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 550 - -
Psa5g4215 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 341 - -
Psa5g4215 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 292 IPR001680 GO:0005515
Psa5g4215 574 SMART ctlh 95 152 IPR006595 -
Psa5g4215 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 550 IPR001680 GO:0005515
Psa5g4215 574 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Psa5g4215 574 SMART WD40_4 463 505 IPR001680 GO:0005515
Psa5g4215 574 SMART WD40_4 508 548 IPR001680 GO:0005515
Psa5g4215 574 SMART WD40_4 339 378 IPR001680 GO:0005515
Psa5g4215 574 SMART WD40_4 420 459 IPR001680 GO:0005515
Psa5g4215 574 SMART WD40_4 250 289 IPR001680 GO:0005515
Psa5g4215 574 SMART WD40_4 297 336 IPR001680 GO:0005515
Psa5g4215 574 CDD WD40 254 547 - -
Psa5g4215 574 SUPERFAMILY WD40 repeat-like 249 547 IPR036322 GO:0005515
Psa5g4215 574 PANTHER WD REPEAT PROTEIN 26-RELATED 1 566 - -
Psa5g4215 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 514 IPR001680 GO:0005515
Psa5g4215 574 ProSiteProfiles LIS1 homology (LisH) motif profile. 62 94 IPR006594 GO:0005515
Psa5g4215 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515
Psa5g4215 574 PANTHER FAMILY PROTEIN/WD-40 REPEAT PROTEIN, PUTATIVE-RELATED 1 566 - -
Psa5g4215 574 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 100 152 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4215 Psa-Chr5 337660006 337666975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4215 306 552 Eukaryotic Initiation Factors Gene Family AT2G46290 22.530 2.50e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4215 K22382 - gmx:100802844 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4215 5 337660006 337666975 Psa2g0426 2 17918925 17923836 PCT