Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4208 ATGGAGAATATTGATCAACTCAATGTTTGGAAATATGATCATGCAATACAAGATTATGATCCATTTCTACCTCCTTTTCCATCTTCTTCATATGATAATAATTATCTTTACAGAGGAAACTCGAGTGATGGTTATATTTCAAAAGATTGGTCGTCACATTATGGATTTCCCATGCAAGATACTATATTTGATGCTATCCCTATCAAGGAATATTATCATCCTGAATATCATTATGAAACTTTTCCTAATGAAATATCAACACAAATAAGCATACAAGACTATGGTTTTTATGATGCTAAAAATGAGGTTTCAACATGGAGTGAAATTGATGCTGGATTTTATTTGGATAAAAATGTGTTTTCTATTAGCAACAACAATATTGGAGAAAATAATGCAATGGAAAATGTGAAGGGTAAACGATGTAGAGAAGAGAATATTAATAGTGCAAGAATGTTAACTAAAAAGAATATTTCTGAGTATTTCTACATGCCAATATCACAAGCTGCAAGAGAGCTTAATGTTGGACTTACTCATTTGAAGAAAAGGTGTAGGGATCTTGGAATTCAAAGGTGGCCCCATAGGAAACTAATGAGTCTTCAAACCCTAATTAAAAATGTTCAAGAGCAGGGAAATGAGAGTGATGAAAAAATAAGGAATGCTGTGGAAATATTGAAGAAAGAAATGAAGATGGTAGAGGAAAAACCAGATTTGCAACTTGAAGAAAACACAAAAAGGCTTAGACAAGCATGCTTCAAGGCTAATTACAAGAAGAGAAGATTAATGGTCATGAGATTAATGGATCAACAGCATTCTTCTCTAAGTGAAAGTGAAAGTGTTAATAATTACAAAATGGGATAA 858 0.3217 MENIDQLNVWKYDHAIQDYDPFLPPFPSSSYDNNYLYRGNSSDGYISKDWSSHYGFPMQDTIFDAIPIKEYYHPEYHYETFPNEISTQISIQDYGFYDAKNEVSTWSEIDAGFYLDKNVFSISNNNIGENNAMENVKGKRCREENINSARMLTKKNISEYFYMPISQAARELNVGLTHLKKRCRDLGIQRWPHRKLMSLQTLIKNVQEQGNESDEKIRNAVEILKKEMKMVEEKPDLQLEENTKRLRQACFKANYKKRRLMVMRLMDQQHSSLSESESVNNYKMG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4208 285 Pfam RWP-RK domain 152 199 IPR003035 -
Psa5g4208 285 ProSiteProfiles RWP-RK domain profile. 133 220 IPR003035 -
Psa5g4208 285 PANTHER PROTEIN RKD1-RELATED 48 280 - -
Psa5g4208 285 Coils Coil 214 234 - -
Psa5g4208 285 PANTHER PROTEIN RKD4 48 280 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4208 Psa-Chr5 336732954 336734314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4208 139 259 AtRKD Transcription Factor Family AT1G18790 63.281 6.19e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Psa5g4208 RWP-RK 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4208 - - mtr:MTR_3g435550 300.827