Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4207 ATGGCTGAACATAACATGCAAATTTCACTCTCAAGCTCCTCAAACGATTCCTCAGACCAAGAAAAACCTTTCACCACCGCCATGAACCCAACAACCGACACCGGCGGTTCATCTCATCAACCAACACCAACTGATTCACCACAACCCTACAGAAAGCCGCGTGGCAGACCACCAGGTTCTAAAAACAAACCAAAACCACCTCTTGTAATAACACAAGACAATGAACAAGCCATGAAACCTGCCATCATTGAAGTTGCTGCTGGTACTGATGTTCTTGAAGCTGTCATCCAGTTTGCTGTTCGTCTTGGTTCATGTCTCACCATTCTCAGCGGTTCTGGTACTATTGCTGTTGCTACACTCCATTACCCAGTTTGTCAATCTCCTGCTTTTACTCTTCATGGACCTTTTTCTTTGTTGACTTTGACTGGTACTTTTTTCTTCCCACCTTCTCCACCACCACCTCCTCCTCTTCCTATTTCTCTTCCTATTGCTTCATCTTCTTCATCAAACCCTAACCCTAACCAGTTAGAAACACCAACACTAGCTTCAACTTTTGGTATTACTCTTGCTGGTATGCATGGACAAATCTTTGGTGGGATAATTGGTGGAAAAGTTATAGCTGGTGGTGATGGTGTTAAGATTGTTGCTTCATTGTTTAAAAATCCTGAACTTCATAGGGCTGCTGGTATTCTTTTGGAAGCTGATGATGATGGTGAAGATGCTGATGATAACAATGGTGGAGATCCTGGTGCTGGTAGTAGTGGTGGTACTGCTGCTGAGAATGTGTCTGGTTTCAATGTTCCTAATCCAATGACTATGAATCCACCATCACATTCTGATACAAACTTCATGTCATGGAATCACCCTTCTCATCCTCGTCCTCCGAATTTCTAA 894 0.4329 MAEHNMQISLSSSSNDSSDQEKPFTTAMNPTTDTGGSSHQPTPTDSPQPYRKPRGRPPGSKNKPKPPLVITQDNEQAMKPAIIEVAAGTDVLEAVIQFAVRLGSCLTILSGSGTIAVATLHYPVCQSPAFTLHGPFSLLTLTGTFFFPPSPPPPPPLPISLPIASSSSSNPNPNQLETPTLASTFGITLAGMHGQIFGGIIGGKVIAGGDGVKIVASLFKNPELHRAAGILLEADDDGEDADDNNGGDPGAGSSGGTAAENVSGFNVPNPMTMNPPSHSDTNFMSWNHPSHPRPPNF* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4207 297 CDD DUF296 82 145 IPR005175 -
Psa5g4207 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 217 IPR005175 -
Psa5g4207 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 292 IPR014476 GO:0003680
Psa5g4207 297 MobiDBLite consensus disorder prediction 256 291 - -
Psa5g4207 297 ProSiteProfiles PPC domain profile profile. 75 242 IPR005175 -
Psa5g4207 297 MobiDBLite consensus disorder prediction 46 64 - -
Psa5g4207 297 MobiDBLite consensus disorder prediction 248 297 - -
Psa5g4207 297 PIRSF ESCAROLA 163 295 IPR014476 GO:0003680
Psa5g4207 297 PIRSF ESCAROLA 1 166 IPR014476 GO:0003680
Psa5g4207 297 MobiDBLite consensus disorder prediction 1 45 - -
Psa5g4207 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 226 - -
Psa5g4207 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 292 - -
Psa5g4207 297 MobiDBLite consensus disorder prediction 1 66 - -
Psa5g4207 297 Gene3D - 79 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4207 Psa-Chr5 336043796 336045651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4207 37 226 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 40.816 1.97e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4207 - - cam:101503818 210.69