Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4121 ATGTTTTCCACCCTTCTCACAAATGGGGTTCCCTCAAAATCTCACCTTTCTCATCCCCACCTCCCCAAAACCCGTTTCCCCCATTTCCCAATCCGCTCCGGAATCCGCGAAATCCGAGACAGAATCAACAGCGTCAAAACCACTCAAAAAATCACCGAAGCAATGAAACTAGTCGCCGCCGCCAGAATCCGCCGCGCACAAGAAGCCGTTATCAACGGCCGACCCTTCTCCGAAGCCTTCGCCGAAGTCCTCCAATCCATCAACCAACAGCTCCAATCCGACGATGTCGAAGTTCCTTTAACCGCCGTTCGACCCGTCAAAAACGTCGCCCTCGTTGTCATCACCGGTGACCGTGGCTTATGCGGCGGTTTCAATAACTCCGTTGCCAAAAAAGCAGAAGCCAGAGTTGACGAATTGAAGAAACTTGGTATAGGTTGCGTTGTTATCAGTGTTGGTAAAAAGGGTAATTCTTATTTCAAACGTAGGAGTTTTGTTGAAGTTGATAGATTCATTGAAAACCGCGGTTTTCCGACGACAAAAGATGCTCAGATTATTGCTGATGATGTTTTCTCACTTTTTGTTAGTGAGGAAGTTGATAAAGTTGAACTTGTTTACACAAAGTTTGTTTCTTTAGTTAGGTTTAATCCAGTGATTCAAACATTGTTACCATTATCGAAAAAAGGCGAAGTCTTCGATGTGAATGGGAACTGCGTCGATGCGACCGGAGATGAGTTTTTTAGGTTAACTTCCAAGGATGGAAAATTGGCTTTGAAGAGAGATGTTGTGAAGAAGAAATCGAATGACTGTGTTCCTATTATGGAATTTGAACAGGATCCTGCTCAGATTCTTGATGCGATGATGCCGCTTTATTTGAATAGTCAAGTTTTGAAGGCATTGCAAGAATCATTGGCTAGTGAACTTGCTGCTAGAATGGGTGCTATGTCTAATGCGACTGATAATGCTGTTGAGTTGACTAAGAATCTTTCTGTGGTTTATAATAGGGAAAGGCAAGCTAAGATTACTGGTGAGATTATGGAGATTGTGGCTGGATCTGAAGCATTGACACCAATTGATTGA 1077 0.4355 MFSTLLTNGVPSKSHLSHPHLPKTRFPHFPIRSGIREIRDRINSVKTTQKITEAMKLVAAARIRRAQEAVINGRPFSEAFAEVLQSINQQLQSDDVEVPLTAVRPVKNVALVVITGDRGLCGGFNNSVAKKAEARVDELKKLGIGCVVISVGKKGNSYFKRRSFVEVDRFIENRGFPTTKDAQIIADDVFSLFVSEEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNCVDATGDEFFRLTSKDGKLALKRDVVKKKSNDCVPIMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKNLSVVYNRERQAKITGEIMEIVAGSEALTPID* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4121 358 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 13 354 - -
Psa5g4121 358 PANTHER ATP SYNTHASE GAMMA CHAIN 13 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 Hamap ATP synthase gamma chain [atpG]. 32 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 Gene3D - 101 226 - -
Psa5g4121 358 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 PRINTS ATP synthase gamma subunit signature 199 216 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 PRINTS ATP synthase gamma subunit signature 301 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 PRINTS ATP synthase gamma subunit signature 332 353 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 34 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 Pfam ATP synthase 35 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 Gene3D ATP synthase, gamma subunit, helix hairpin domain 254 354 - -
Psa5g4121 358 CDD F1-ATPase_gamma 35 351 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 34 354 IPR035968 GO:0015986|GO:0045261|GO:0046933
Psa5g4121 358 MobiDBLite consensus disorder prediction 1 23 - -
Psa5g4121 358 Gene3D ATP synthase, gamma subunit, helix hairpin domain 34 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4121 Psa-Chr5 326524847 326526524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4121 2 354 Primary Pumps ATPases AT1G15700 68.927 6.39e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4121 K02115 - qsu:112000322 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4121 5 326524847 326526524 Psa5g4121 5 326524847 326526524 ECH