Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4115 ATGGAACACATGACAAGTATTGGAGATGGAGTGAATGATGAAAATGTGTTGTTTGGAATGATGGAAAAAGGCGGCGGTAGTGGCGGTGGCGGTGGTGGCGGTTGTAATAACGATGACGTGAGTTTGAAGAAAGGTCCTTGGACAACAGGAGAGGATGCAATTTTGATAGATTATGTAACAAAACATGGTGAAGGGAATTGGAATGCAGTTCAAAGGAATACAGGCTTGAATCGTTGCGGGAAAAGTTGTAGGCTTAGATGGGCTAATCATTTAAGACCTAATTTGAAAAAAGGAGCATTTTCTCATGATGAAGAGAAACTCATTGTTGAACTTCATGCTCAGTTTGGTAACAAATGGGCTCGAATGGCTGCGTTGTTACCGGGAAGAACAGATAATGAGATCAAGAATTACTGGAACACGAGAATCAAACGTCGTCAACGACAAGACACTTCATCATCTTCTTCGCAACTTTCCTTCACTTTTCAAAGACCTGCACCACTCTTATCTACACCGCTTCGCTTCAAACGATACCGTTCAACATCAAATTTTGGACTAATCCCGAATTCCATGACACAAAATTGCTCTTCTTCACTCAACGATCCTTCTTTAACTTCTCATCATCATCACGATAGCTTCCGGTTTCCAATGCAATACAACTCAAACTTTCCTCACTATTTTCATTCTCCTTTGTTAGAATCCGATCTAGCCGTTTCTTCATCGTCCTCCTCGCCTTTCTCAGCGAAGTTGGAGCTACCTTCAAATCAATATTTAAGAACACACTCAGAACAAGATGTTAAGCCTAATATTGATTTCAATGATCCAAATTCTTTTCAAAATAATAACAGTAGTATCATGATGGGAGATATTTTAATGGAAGCACAAACCCTAGCATCTGGCCAAAATTCAAAGAAAAGACATTACTTAAGCTTAAATGAAGAAAATGATATGTTCAATGGATGTCAAGGCATTGATGATTTTACACTAAGCTCTATTTATTGGCCTTCTAATTCAGGAATAAAACCAAAGGAAGAAACACCAGACCTAAGCAAATTTATGAATGATGAAATGTCAACAATGCTAACAGTGATGCCATCATCAACAATGCAAAGTCAAGATTGGAATGATAATAATAATAATAATGATAATATTAACGATAACAATGCATCAGAAGTGACCAATGTTCAATCTTCTAGTGGTGTAATGGGAGATGAAAATTTTGGACTTGATATTAAGCCTATAGCTTCATTGTTTCCTCTTACAAATACTACAAACAATGATAATGGTAATGAAAACAATGGTTGCTACACTTGGGACAATTTATCTGGACTATGTTAA 1335 0.3715 MEHMTSIGDGVNDENVLFGMMEKGGGSGGGGGGGCNNDDVSLKKGPWTTGEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSHDEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQDTSSSSSQLSFTFQRPAPLLSTPLRFKRYRSTSNFGLIPNSMTQNCSSSLNDPSLTSHHHHDSFRFPMQYNSNFPHYFHSPLLESDLAVSSSSSSPFSAKLELPSNQYLRTHSEQDVKPNIDFNDPNSFQNNNSSIMMGDILMEAQTLASGQNSKKRHYLSLNEENDMFNGCQGIDDFTLSSIYWPSNSGIKPKEETPDLSKFMNDEMSTMLTVMPSSTMQSQDWNDNNNNNDNINDNNASEVTNVQSSSGVMGDENFGLDIKPIASLFPLTNTTNNDNGNENNGCYTWDNLSGLC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4115 444 Gene3D - 99 162 - -
Psa5g4115 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Psa5g4115 444 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 22 148 - -
Psa5g4115 444 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 152 438 - -
Psa5g4115 444 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Psa5g4115 444 Pfam Myb-like DNA-binding domain 97 140 IPR001005 -
Psa5g4115 444 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Psa5g4115 444 SMART sant 96 144 IPR001005 -
Psa5g4115 444 SMART sant 43 93 IPR001005 -
Psa5g4115 444 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Psa5g4115 444 CDD SANT 46 91 IPR001005 -
Psa5g4115 444 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Psa5g4115 444 CDD SANT 99 140 IPR001005 -
Psa5g4115 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 91 IPR017930 -
Psa5g4115 444 Gene3D - 43 96 - -
Psa5g4115 444 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 152 438 - -
Psa5g4115 444 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 22 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4115 Psa-Chr5 326216719 326218554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4115 20 428 MYB Transcription Factor Family AT4G26930 37.793 4.46e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g4115 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4115 - K09422 lja:Lj6g3v0869180.1 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g4115 5 326216719 326218554 Psa5g4115 5 326216719 326218554 ECH