Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4074 ATGAAGAAGCGACAAGTTGTGTTGAAAAGAGATGTTGCTAAAACTACATCTTCAATCACAAGAAATATTCGATACGGAGAGTGCCAGAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCTAGCACAGGCGAAGAAGGAACAGGTGGGGCTCTTACATGTGCTGCTTGTGGTTGTCATAGGAACTTTCATAGAAGGGAAGTGCAAACTGAAGTTGTTTGTGAGTACTCACCACCGAATTCTGCTCGATGA 276 0.442 MKKRQVVLKRDVAKTTSSITRNIRYGECQKNHAANIGGYAVDGCREFMASTGEEGTGGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAR* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4074 91 Pfam ZF-HD protein dimerisation region 23 76 IPR006456 -
Psa5g4074 91 PANTHER MINI ZINC FINGER PROTEIN 3 3 88 - -
Psa5g4074 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 75 IPR006456 -
Psa5g4074 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 88 - -
Psa5g4074 91 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 76 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4074 Psa-Chr5 323274991 323275266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4074 1 89 Zinc finger-homeobox gene family AT1G18835 75.556 1.51e-42 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa5g4074 ZF-HD_dimer 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4074 - - rcu:8263435 154.451