Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4072 ATGTCACCCAGTTTCATCTTCGACCCTCCCAGCGACGAAGATATCGAACTCTCCGAACACGAATCTGATTCGGAAACAGAACAAGAACAACCTGAATCTCCATCTTCATCACAATCACAATCACAATCAGAATCAGAGCTAGAATCAGAAGAAGATGAGGTCGTAGAACCGCGAGTTTCAAAAAAGAAAACACAGTCTCCATGGGATTTCACTAAATACTCTGAATCAGTAGCTGAAGAACATGCTCGTAGAAGCACAACATCAGTAAACGACAAAATCTCAGCCGTCAGACAACGTTCAGCGCCCGTCGTTGCGTTGCCCGACTCGGATGAAGATAGTGCCTCTGACTCTGAGCCTGATAAACAAGAAGATTATAGACCAGAAGAAGAAGATGAAGAAGAGGGTAATGCTGGTGACACTAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCAGTGCTGATTCCTTCTTGCAACTCAATTTGTCTCGCCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCGGCTTGTGTACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGCTGTTTCGTCCAAAACGCGTGTATGCAATTAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCTGCCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTTACTGACATAAGGAGTTGTCTGATAGTCGGTGGTCTGTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCTATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCTATGTCGGTGGATTTGGATGATCTTGCTGTTTTAATCCTCGATGAAGCTGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAGGAACTTGTTCGTGTGTGTCCCCGAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACCGAGGAGGTTGATGATCTTATTAAACTTTCCCTATCAAAACCACTGCGTCTTTCTGCTGATCCATCTGCAAAACGACCAGCATCCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGCGAAGTCAACCAGGAAGCAGTTCTTCTAGCAATGTGCACCAAAACTTTTACTTCTAAAGTGATCATTTTCAGTGGAACTAAGCAAGCAGCACATAGGCTAAGGATTATATTTGGATTATCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGATATTATTGGTGTTCAAACAGTTATCAATTTTGCATGTCCTCGCGATCTTACCAGCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGCTGGATCTGCCGTCACATTTGTTACTGATAATGATCGGTCACTTCTAAAATCTATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTGGCAGAGCAATCTATACTCAAGTGGTCTCAAGTAATTGAGCAAATGGAGGATCAAATTTCTGAAGTACTTCAAGAAGAGAGGGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACACAGGGATGAGATCTTCTCCCGCCCCAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCAGCTAAAGCAGCAAAGGCATCCATAGATAAGGAAAATGGTTCTTCTCAGAAGATGGTTAGTGCCCAGGAGGCTGAAGACCTAAAACTGAAGGAAAAGAGGAAACGGGAGCGAGAGAAAAATATGCCTAGAAAGAAACGCAGAAAATTGGAAGCAGCTCGAGAGATGTTGGAGGATGAGGATGAGGAAGACAAACCAAAAGGTAAGGGGGCAGATAAGAATGAAAAGAGTGGAATGACGCTTGCTGATCTTGCATACCGACGTGCAAAAGCAGTAAAGGCTGTCAAGAGGGCACTAGATTCCGGAAAGATTGTGAGGAAGCCTCAGAAGAAATCTAATAAATCCACTTCTCGAAAGACTTCCTCTTCAAGGACAGAAGAAATGCGGGAGTTATTCCAGACTGACATGAAGGATAAAAAGCCAAAACAGAGAGGTTCTGGACTAGGAAAGAAGCCCAATAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2289 0.4408 MSPSFIFDPPSDEDIELSEHESDSETEQEQPESPSSSQSQSQSESELESEEDEVVEPRVSKKKTQSPWDFTKYSESVAEEHARRSTTSVNDKISAVRQRSAPVVALPDSDEDSASDSEPDKQEDYRPEEEDEEEGNAGDTKSFFAPSDGASFSADSFLQLNLSRPLLRACEALGYAKPTPIQAACVPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVYAIRVLILTPTRELAAQVHSMIEKLAQFTDIRSCLIVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIQELVRVCPRKRQTMLFSATMTEEVDDLIKLSLSKPLRLSADPSAKRPASLTEEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKSIAKRAGSKLKSRIVAEQSILKWSQVIEQMEDQISEVLQEEREEMILRKAEMEATKAENMIAHRDEIFSRPKRTWFVTEKEKKLSAKAAKASIDKENGSSQKMVSAQEAEDLKLKEKRKREREKNMPRKKRRKLEAAREMLEDEDEEDKPKGKGADKNEKSGMTLADLAYRRAKAVKAVKRALDSGKIVRKPQKKSNKSTSRKTSSSRTEEMRELFQTDMKDKKPKQRGSGLGKKPNKSFKSKSRYKRK* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4072 762 MobiDBLite consensus disorder prediction 111 136 - -
Psa5g4072 762 MobiDBLite consensus disorder prediction 12 28 - -
Psa5g4072 762 Coils Coil 533 571 - -
Psa5g4072 762 CDD SF2_C_DEAD 372 504 - -
Psa5g4072 762 MobiDBLite consensus disorder prediction 29 44 - -
Psa5g4072 762 MobiDBLite consensus disorder prediction 602 762 - -
Psa5g4072 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Psa5g4072 762 PANTHER BNAA01G17110D PROTEIN 57 720 - -
Psa5g4072 762 CDD DEADc_DDX27 166 361 - -
Psa5g4072 762 MobiDBLite consensus disorder prediction 717 742 - -
Psa5g4072 762 MobiDBLite consensus disorder prediction 1 140 - -
Psa5g4072 762 SMART helicmild6 410 495 IPR001650 -
Psa5g4072 762 SMART ultradead3 174 375 IPR014001 -
Psa5g4072 762 MobiDBLite consensus disorder prediction 686 704 - -
Psa5g4072 762 MobiDBLite consensus disorder prediction 641 673 - -
Psa5g4072 762 Pfam Helicase conserved C-terminal domain 392 495 IPR001650 -
Psa5g4072 762 Gene3D - 116 361 IPR027417 -
Psa5g4072 762 Pfam DEAD/DEAH box helicase 179 349 IPR011545 GO:0003676|GO:0005524
Psa5g4072 762 Gene3D - 362 531 IPR027417 -
Psa5g4072 762 PANTHER RNA HELICASE 57 720 - -
Psa5g4072 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 515 IPR027417 -
Psa5g4072 762 Coils Coil 619 639 - -
Psa5g4072 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 534 IPR001650 -
Psa5g4072 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 360 IPR014001 -
Psa5g4072 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4072 Psa-Chr5 322701638 322710050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4072 110 512 Eukaryotic Initiation Factors Gene Family AT3G13920 32.020 1.44e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4072 K13181 - gmx:100791233 1040.41