Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4057 ATGGAAGGGGGTGAAAGTAGTAAAACTGATAACCCTAATTGGGAAGTTGAACTAAGCAAGTATGAGAATGTTATAGCTTCAGGAACCAATTCTATGAAAATTAAATCTATGATTATGCTGGCCAATTACTCCAAACAAGCCCCTGAAAATGTATTATCCACCACCATACCATTTCTCATTCAGATTCTTGATCATGATAACACTGAAAATGACTTTCCTCCTAGTTTACTTCAAGAAGCTGCTGCTTATTGCTTGAAGTGTATTGCTTGCAGAGGTGATGGTAGTATGGCAGTTGAAATGGGTAGACATGGTGTTGCATATTCTTTGATGAGATTGTTGCCTCGCGCTGAGGGAAAGATGCAGAAAGTTGTGATAAAATGTTTGTTGGTTGTTGTTAGTTTTTGTAATAGAAGTAGGACAGTTGTTGCAGCTAATGACGGATTAGAAATTGTAATCGGTTTGTTGAATACTTGTAGCAGTGATGTTAGATTGTATTTGTTAGAGATTTTGAGTGCGTTGGCGCTTCGGAGGGAAGTTAGAAAGGAACTTGTTAGGTTAGGAGATCTTCGTTTTATTGTAGAGGCTGCTGGTGTTGGAAGTATGGTTTCTAGGGAAAGGGCTTCCCAGTCGATTGGATTGATTGGAGTTACGAGACAGGCTAGGCATACACTTGTTGAATTAGAAGTCATACCGGTGCTTGTGGAGTTGTTTCGCGTTGGAGATAACGGTACAAAGCTTGTAGCTGCTAATACTCTCGGTGTGGTATCGGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGGGCTATTCCTCTTTACGCCGAGCTTCTTCAAGGAAGCGATGCTTCTGGTAAGGAGATAGCGGAGGATGTGTTTTGTATATTGGGTGTTGCTGAGGCTAATGCGGTTGAAATTGTTGGTCACTTGGTGAGAATTCTTAGAGAAGGTGATGATGAAGCTATAGCAGCAGTTGCTGATGTGATATGGGATCTGTCGGGATACAAGCACGCAATTTCTGTGATTCGGGATTCAGGTGCGATCCTGATCCTTGTTGAACTTTTGGGCCATGGGAGTGAAGAAATAAAGTTGAATGTTTCTGGGGCATTTGCTCAACTAAGCTATGATGAAGCTGGTAGAACGGCTCTTGCTGATGCTGGGGCAATTCCGATTCTCATTGATTTGCTACTCAACGAGACCGAGGAACTAAGGGATAATGTTGTTGAGGCTCTTTCTAATTTTCATGAAGACCCTTTATACCGTGATAGAGTATCTGATGTAGTTAATGTTCCTTCGTTCAGAAATTTGCAGAATAGACTGATTAGTATTCGTGCATCGAACGAGCATATGACTCGATCTTTACGTAGAACGAGTGTTGAACAGCTCATTTGGAACCCGGATCATGTGTAA 1410 0.4163 MEGGESSKTDNPNWEVELSKYENVIASGTNSMKIKSMIMLANYSKQAPENVLSTTIPFLIQILDHDNTENDFPPSLLQEAAAYCLKCIACRGDGSMAVEMGRHGVAYSLMRLLPRAEGKMQKVVIKCLLVVVSFCNRSRTVVAANDGLEIVIGLLNTCSSDVRLYLLEILSALALRREVRKELVRLGDLRFIVEAAGVGSMVSRERASQSIGLIGVTRQARHTLVELEVIPVLVELFRVGDNGTKLVAANTLGVVSAHVDYIRPVAQAGAIPLYAELLQGSDASGKEIAEDVFCILGVAEANAVEIVGHLVRILREGDDEAIAAVADVIWDLSGYKHAISVIRDSGAILILVELLGHGSEEIKLNVSGAFAQLSYDEAGRTALADAGAIPILIDLLLNETEELRDNVVEALSNFHEDPLYRDRVSDVVNVPSFRNLQNRLISIRASNEHMTRSLRRTSVEQLIWNPDHV* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4057 469 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 3 464 - -
Psa5g4057 469 SMART arm_5 376 416 IPR000225 GO:0005515
Psa5g4057 469 SMART arm_5 217 257 IPR000225 GO:0005515
Psa5g4057 469 SMART arm_5 335 375 IPR000225 GO:0005515
Psa5g4057 469 SMART arm_5 258 298 IPR000225 GO:0005515
Psa5g4057 469 SMART arm_5 135 175 IPR000225 GO:0005515
Psa5g4057 469 Coils Coil 393 413 - -
Psa5g4057 469 Gene3D - 297 438 IPR011989 -
Psa5g4057 469 PANTHER U BOX DOMAIN-CONTAINING 3 464 - -
Psa5g4057 469 Pfam Armadillo/beta-catenin-like repeat 379 413 IPR000225 GO:0005515
Psa5g4057 469 Gene3D - 22 296 IPR011989 -
Psa5g4057 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Psa5g4057 469 SUPERFAMILY ARM repeat 17 416 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4057 206 431 U-box Gene Family AT2G23140 27.119 1.58e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4057 - - cam:101502901 625.165