Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4053 ATGGAAAAAGAAGAAACCATAAGAAACTCTAGTGTTGTTCAAGTTCCACATTCTTCTTCTTCTTCTCAAGTCATGTTGTTTAAGGGAAAACAACCAATGGTGGATGAAGTGGATTTCTTTGCTATCAAGAATATGAGTCCATTTAATCATGAACAAATAGAGCATCATCATCACGTAGATACTTGTTTAGATCTTCTAACAAAGATTTCTCCTAGCAACAAACCCGATGACGTCGAATCTGATGCAACAATTAAGTATGTTGCCTTGGCAGCTGAATTGCACCAAATGAATGTTGAAAATCAGCATTTAACAGATCTGCTTGATAGACTCAGAATTAGTTACAAAGAGTTAGAAGAGCGTGTTCTACGCCTAAAGCAGAAACAAAATTCACAAGCTAAGACAACAGTTCGAGGGTGGATCTCAAACAAAGTTCCAAGAGTGGTTTCTGATCAAGCATCTGAATCAATGATGAAGAAAGCTCGTGTATCAGTTAGGGCAAAATCAGAAGCATCTATGATTTCGGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCGAAGGGGAATCCACATCCAAGAGCTTATTATCGTTGCACAATGGGGACTACATGTCCCGTTCGGAAACAAGTACAAAGGTGTGGTAATGATAGAAGTGTGTTGGTTACAACATATGAAGGACAACATGATCATCCTCTTCCACCCGCAGCTAAAACAATGGCATCAACAACAACATCAGCGGCATCCATGCTTCTTTCAGGACCAATGATAAGTGCGGATGGTTTTATACATCCAACAATGTTAGAAAGCTCGTCACTCCCTTGTTCACACAACATAACACTCTCGGCTTCTGCTCCATTTCCAACTATCACATTAGATCTCACTCAAAGTCCTACCAATAATTCATCACAGGGTCAGTTTAGCCTCTTTCAACCTATTTTGCCTCAGAAATTTATGTCAGCTTCAAATATTTTGGGAATGGAAAATGATTCATTTGTTAACACACCTAATGCTGCAACAACTGCTATGACTTCTAATCCAGAATTCCAAGCTGCTCTTGTTGCTGCAATAACTTCTTTTATAGAAAGTAGTTCAAATTGA 1101 0.3896 MEKEETIRNSSVVQVPHSSSSSQVMLFKGKQPMVDEVDFFAIKNMSPFNHEQIEHHHHVDTCLDLLTKISPSNKPDDVESDATIKYVALAAELHQMNVENQHLTDLLDRLRISYKELEERVLRLKQKQNSQAKTTVRGWISNKVPRVVSDQASESMMKKARVSVRAKSEASMISDGCQWRKYGQKMAKGNPHPRAYYRCTMGTTCPVRKQVQRCGNDRSVLVTTYEGQHDHPLPPAAKTMASTTTSAASMLLSGPMISADGFIHPTMLESSSLPCSHNITLSASAPFPTITLDLTQSPTNNSSQGQFSLFQPILPQKFMSASNILGMENDSFVNTPNAATTAMTSNPEFQAALVAAITSFIESSSN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4053 366 Coils Coil 100 134 - -
Psa5g4053 366 Gene3D WRKY domain 158 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g4053 366 SUPERFAMILY WRKY DNA-binding domain 167 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g4053 366 ProSiteProfiles WRKY domain profile. 168 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g4053 366 Pfam WRKY DNA -binding domain 175 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g4053 366 SMART WRKY_cls 173 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g4053 366 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 14 137 - -
Psa5g4053 366 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 138 364 - -
Psa5g4053 366 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 14 137 IPR044810 GO:0003700
Psa5g4053 366 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 138 364 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4053 Psa-Chr5 320023329 320025148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4053 142 361 WRKY Transcription Factor Family AT4G04450 56.148 4.06e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g4053 WRKY 1.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4053 - K25731 pvu:PHAVU_006G047300g 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6015 5 516446279 516449131 Psa5g4053 5 320023329 320025148 ECH
Psa5g4053 5 320023329 320025148 Psa1g4089 1 330180323 330183676 ECH
Psa5g4053 5 320023329 320025148 Psa5g4053 5 320023329 320025148 ECH