Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4052 ATGTTGTTTAAAGGAAAACGACTAATTGTAGATGAAGTGGATTTCTTTCCTGAGAAGAATATGAGTCCATTTAATAATGACCAAACACTGAACCTACAAATGGATCATCATCATCATCACGTAGATACTTGTTTAGATCTTCTCACAAAGATTTCTCCTAGCAACAAACCGGATGATGTCGAATCCGATGCAACCATTAAGAACAATAATAAGTATGTTGCCTTGACAGCTGAATTGCACCAAATGAATATTGAAAATCAGCATTTGAGAGATCTGGTTGAAAAACTCAGAATTAATTACAAAGACTTAGAAAAGCGTGTTGTATGGCTAAAGCAAAAACACTATAAACACGAGAAAAATGATGAACCTTCAGAGGAGAGAAAAAACATGGTTGAGTTGATTGAGTGTGATAGAAAGACCGGAAAGATTGGCAATGGAGTTATACTAGACAGGATAGATATGGATGATAATGAGATTTCACAAGCTAAGACAACAACTCCAAGCTCAAACAAAGTTCCAAGGTTGAATTCGGATCAAGCATCTGAATCAATGATGAAGAAAGCTCGTGTATCAGTTAGGGCAAAATCAGAAGCATCTATGATTTCGGATGGATGTCAATGGAGAAAGTATGGACAGAAGATGGCAAAGGGGAATCCACATCCAAGAGCTTATTATCGTTGCACAATGGGGACTACATGCCCCGTTCGGAAGCAAGTACAAAGGTGTGCTGATGACAGTAGTGTGTTAGTTACAACATATGAAGGACAACATGATCACCCTCTTCCACCAGCAGCTAAAACAATGGCATCAACAACAACATCAGCGGCATCAATGCTTCTTTCAGGACCAATGATAAGTGCAGATGGTTTAATAGAAAGCTCGTCACTCCCTTGTTCACACAACATAACACTCTCGGCTTCTGCTCCATTTCCAACTATCACATTAGATCTCACTAAAACTCCTACCAATAATTCATCACATGGTCAATTCAACATCTTTCAACCCATTTTGCCACATAAATTTATGTCAGCTCCAAACATTTTTGGAATGGATCAAAAGGGTTCATTTGCTGACACGGTTAGTGCAGCAGCAACTGCTTTGACTTCTGATCCAAAATTCCCAACTGCTCTTGTGGCTGCAATAACTTCCATCATTGGAAGTAATTCAAATATCAACAAGAATGACATTGCCAATGACATAAAGAGAGACCATCAATGCAATAATTCTTAG 1230 0.3837 MLFKGKRLIVDEVDFFPEKNMSPFNNDQTLNLQMDHHHHHVDTCLDLLTKISPSNKPDDVESDATIKNNNKYVALTAELHQMNIENQHLRDLVEKLRINYKDLEKRVVWLKQKHYKHEKNDEPSEERKNMVELIECDRKTGKIGNGVILDRIDMDDNEISQAKTTTPSSNKVPRLNSDQASESMMKKARVSVRAKSEASMISDGCQWRKYGQKMAKGNPHPRAYYRCTMGTTCPVRKQVQRCADDSSVLVTTYEGQHDHPLPPAAKTMASTTTSAASMLLSGPMISADGLIESSSLPCSHNITLSASAPFPTITLDLTKTPTNNSSHGQFNIFQPILPHKFMSAPNIFGMDQKGSFADTVSAAATALTSDPKFPTALVAAITSIIGSNSNINKNDIANDIKRDHQCNNS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4052 409 ProSiteProfiles WRKY domain profile. 196 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g4052 409 Pfam WRKY DNA -binding domain 203 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g4052 409 SMART WRKY_cls 201 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa5g4052 409 Coils Coil 79 113 - -
Psa5g4052 409 MobiDBLite consensus disorder prediction 161 184 - -
Psa5g4052 409 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 3 124 - -
Psa5g4052 409 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 121 392 - -
Psa5g4052 409 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 124 IPR044810 GO:0003700
Psa5g4052 409 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 121 392 IPR044810 GO:0003700
Psa5g4052 409 SUPERFAMILY WRKY DNA-binding domain 195 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa5g4052 409 Gene3D WRKY domain 186 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4052 Psa-Chr5 319960603 319962706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4052 7 388 WRKY Transcription Factor Family AT1G62300 39.093 8.64e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa5g4052 WRKY 4.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4052 - - cam:101500503 384.03