Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4043 ATGGCTGAAGCTGTTCAAGAACCTGCTGTAGTTTCAGATCCTTCCCTGATCGAAGTCAAACTCTTTAACCGCTGGAGCTTCGATGACATTCAGGTTTCTGATGTGTCTCTGAGTGATTACATTGGAGTTTCGGCATCAAAGCATGCGACATATGTTCCACATACTGCTGGTAGATATTCTGTCAAAAGGTTCAGGAAAGCGCAGTGTCCCATTGTTGAGAGGCTTACCAACACTCTCATGATGCACGGGAGGAACAATGGAAAAAAGCTTAAGACGGTTGGAATCATGAGGCACGCCATGGAGATTATTCACTTGCTTACTGATCAGAACCCAATTCAGGTTATTGTTGATGCTGTTATCAACAGTGGTCCTCGTGAAGATGCAACCCGAATTGGTTCTGCTGGAGTTGTGAGAAGACAGGCTGTGGATATCTCACCCCTTCGCCGTGTTAATCAAGCCATCTATCTTCTAATTACCGGAGCACGTGAAGCTGCTTTCAGAAATATTAAGACAATTGCTGAGTGTCTGGCTGATGAACTTATTAATGCAGCCAAAGGTTCCTCTAACAGTTATGCGATCAAGAAAAAAGATGAAATTGAAAGAGTAGCTAAGGCTAATCGTTAA 624 0.4343 MAEAVQEPAVVSDPSLIEVKLFNRWSFDDIQVSDVSLSDYIGVSASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNTLMMHGRNNGKKLKTVGIMRHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLITGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4043 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 207 IPR000235 GO:0006412
Psa5g4043 207 PANTHER RIBOSOMAL PROTEIN S7 4 207 IPR000235 GO:0006412
Psa5g4043 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Psa5g4043 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Psa5g4043 207 Pfam Ribosomal protein S7p/S5e 61 207 IPR023798 -
Psa5g4043 207 Gene3D Ribosomal protein S7 domain 4 207 IPR036823 -
Psa5g4043 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Psa5g4043 207 PANTHER 40S RIBOSOMAL PROTEIN S5 4 207 - -
Psa5g4043 207 TIGRFAM uS7_euk_arch: ribosomal protein uS7 18 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4043 Psa-Chr5 319362492 319364994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4043 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.947 7.42e-129 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4043 K02989 - gmx:100305898 358.992