Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4042 ATGATGATCGACGATAGGCGTTGTAGAAGTACGGTCACAACGAGCTTTCCGGCGGCGACGCGACGTTGCTATGAAGCGACTGTTTCGTCGATGATGATAATGGTTCAGCAGTGTCGTTGTTGTTGCGGCGGGTTTCTCATGGTGGCGTTTGCGAGTGAAGAAGAAGACAACTGGGTTTGTTGTCAGTGGTTAAAGGTGGCGAAGCAGAGTGAATGTCGTGTGGTGATGGTGAATGCCACAGTGAGTACGGCAAAGGGTTTCTGGAGGTTGGAGCGGCGTTACGATGACGTAAGGTCGCGGTGGCAGATGGTGGTTGTGTGGATCGCGGAATGTGAGGGGGAAGAAGGAGGTAGGCGTGAGATGAGAACGCGACGGGGTGAAGGGTTTGCCAGGGAGTGGCAGTGGAGTAAGGTTACGAAGTGTGGTGGATGGCTGGCATGTGAAAGGGATTACGATGAGATGTGTTGTGAAGATGATGGAGCAATGATTTTGTTGAGACAGCGGCCTGAATGGTGTCTATTCGACAAAAATATGGAAAAACGGGGTAAATTGAATGATGGAAGAGTGATAGCAGTGAAGAAGCTATCACATGGTTCAAATCAAGGGAAGACACAGTTTGTTGCGGAGGCCAAGTTGTTGACCCGTGTGCAGCACCGTAATGTGGTCAATTTGTTTGGTTATTGTATCCATGGCAGAGAGAAACTTCTTGTGTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGTTTCTATTCAGGTCAAAAAAGAAAGAAGGGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGTTTACTTTATCTTCATGAACACTCTCACAACTGCATAATCCATCGTGACATAAAAGCAGCCAACATTTTACTTGATGAAAAATGGGTTCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTTCCAGAGGATGAAACTCATGTCAATACACGTGTGGCTGGAACACACGGATACATGGCTCCAGAGTATTTGATGCATGGACACTTATCCGTGAAGGCAGATGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATCACCGGCCATCGAAACTCATCCTCTGATCCGGCCTTCAATGGAGACAATCTCCTTAACTGGGCGTACAAGCTTTACAAGAAAGGGAGGTGGTTAGAAATGGTAGACCCCACAGTGGCATCCTCAGTGGAGATAACAGAACAAGTTGAAGTGTGCATTCGAGTGAGTCTATTGTGCACACAAGGAGATCCACAACTCCGTCCAACGATGGCGCGCGTGGTGTTGATATTGTCAAAGAAGCCACCAAGTCACATGGAAGAGCCAACGAGACCGGGTATACCTGGTTCTAGATACAGAAGAACAGGACCTCGCAGTCACACCCCTTTTACTACTGATGATGAGAATGATTCCTCTGCTTCACACGTTGATTCGAGCAATTATGACACTACTATTGCTACGGCTACCAGTTCTACTTCTTCTGCAACAAGAACAAGCTCTGCTACTGCACAAGCAGATTTGCGAGGGAAACGTCCAATGCTACCTTCATGA 1566 0.4719 MMIDDRRCRSTVTTSFPAATRRCYEATVSSMMIMVQQCRCCCGGFLMVAFASEEEDNWVCCQWLKVAKQSECRVVMVNATVSTAKGFWRLERRYDDVRSRWQMVVVWIAECEGEEGGRREMRTRRGEGFAREWQWSKVTKCGGWLACERDYDEMCCEDDGAMILLRQRPEWCLFDKNMEKRGKLNDGRVIAVKKLSHGSNQGKTQFVAEAKLLTRVQHRNVVNLFGYCIHGREKLLVYEYVPRESLDKFLFRSKKKEGLDWKRRFDIINGVARGLLYLHEHSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDPAFNGDNLLNWAYKLYKKGRWLEMVDPTVASSVEITEQVEVCIRVSLLCTQGDPQLRPTMARVVLILSKKPPSHMEEPTRPGIPGSRYRRTGPRSHTPFTTDDENDSSASHVDSSNYDTTIATATSSTSSATRTSSATAQADLRGKRPMLPS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4042 521 Pfam Protein tyrosine and serine/threonine kinase 186 433 IPR001245 GO:0004672|GO:0006468
Psa5g4042 521 MobiDBLite consensus disorder prediction 440 521 - -
Psa5g4042 521 CDD STKc_IRAK 181 438 - -
Psa5g4042 521 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 181 487 - -
Psa5g4042 521 SUPERFAMILY Protein kinase-like (PK-like) 184 451 IPR011009 -
Psa5g4042 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Psa5g4042 521 Gene3D Transferase(Phosphotransferase) domain 1 241 447 - -
Psa5g4042 521 MobiDBLite consensus disorder prediction 479 510 - -
Psa5g4042 521 Gene3D Phosphorylase Kinase; domain 1 174 240 - -
Psa5g4042 521 SMART serkin_6 174 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g4042 521 PANTHER RECEPTOR-LIKE KINASE 181 487 - -
Psa5g4042 521 ProSiteProfiles Protein kinase domain profile. 151 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4042 Psa-Chr5 319334128 319341155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4042 181 452 Receptor kinase-like Gene Family AT4G11530 50.730 2.04e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa5g4042 PK_Tyr_Ser-Thr 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4042 - - mtr:MTR_1g031780 602.438