Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4028 ATGAAAGTCATTTACAGCCAGAGCCAGAGAAACCCACAGGGAAAGAACTTGAAAAAGATTGAACCTGTGAAGATGGGTCGAGGAGGTGCTACAACCGCTGCGGCGGCGGTCGAACCGGTTTTTTTCAAAGAACCGAGATACAGAGGGGTTAGAAAAAGACCGTGGGGACGGTTCGCGGCTGAGATCAGAGATCCTTTGAAGAAAGCAAGGGTTTGGCTTGGAACCTTCGATACCGCTGAAGAGGCGGCGCGTGCGTACGACACCGCCGCTAGAAATCTCCGTGGACCGAAAGCCAAGACAAATTTTCCTCTCGCACAGCCTTTTTATCAAAATCCTGAAGCCGGAAATCCGTTCGGCGAGCTTAGATTCTACGCCGGCGGTGCCGGAGAAGGTTTTCAGGATCATCGGAGACCTACCTCAAGTGGTATGAGCAGCACGGTTGAGTCCTTCAGCGGTCCACGTCCGGTCAGACCACCGATGCCGCCGTCTGCTGTCACCGGGAGGCGTTACCCAAGGACACCGCCGGTTGCTCCTGAAGACTGCCGTAGCGACTGCGATTCTTCATCATCGGTTGTCGACGATGCCGACAACGACAACGCGGCTTCATCCACTATGCTTTCGTTTAAACGCCAGCCGCTGCCGTTTGATCTGAACGCGCCGCCGTTGGAGGAAGGTGACGTGGCGAACGGACTCGGTGAGGATCTGCACTGCACTCTTCTCTGCCTCTAA 729 0.5514 MKVIYSQSQRNPQGKNLKKIEPVKMGRGGATTAAAAVEPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARNLRGPKAKTNFPLAQPFYQNPEAGNPFGELRFYAGGAGEGFQDHRRPTSSGMSSTVESFSGPRPVRPPMPPSAVTGRRYPRTPPVAPEDCRSDCDSSSSVVDDADNDNAASSTMLSFKRQPLPFDLNAPPLEEGDVANGLGEDLHCTLLCL* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4028 242 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Psa5g4028 242 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Psa5g4028 242 MobiDBLite consensus disorder prediction 135 197 - -
Psa5g4028 242 MobiDBLite consensus disorder prediction 137 151 - -
Psa5g4028 242 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Psa5g4028 242 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Psa5g4028 242 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 216 - -
Psa5g4028 242 PANTHER ETHYLENE RESPONSE FACTOR 25 216 - -
Psa5g4028 242 MobiDBLite consensus disorder prediction 183 197 - -
Psa5g4028 242 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Psa5g4028 242 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Psa5g4028 242 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Psa5g4028 242 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4028 Psa-Chr5 318562610 318563795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4028 23 242 AP2-EREBP Transcription Factor Family AT1G50640 56.170 4.52e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g4028 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4028 K09286 - gmx:100782025 258.84