LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g4005	ATGTCTCACAGAAACATTATTCCATGGAACACTGTGATTGCTGGGTATCTTCACAATAACATGGTGGAACAAGCCAATAAGTTGTTTGATATGATTCCTGGGAGGGACAATTTTTCGTGGGCTTTGATGGTTACTTGCTATACGCGTAAAGGGAAGCTTGTAAAGGATTTGGTTTCTTATAACTCTATGTTAGCTGGTTATACGCAGAATAGGAAATTGAGTTTGGCAATGCGGTTCTTTGTTGGGAAGCTTGTAAAGGATTTGGTTTCTTATAACTCTATGTTAGCTGGTTATACGCAGAATAGGAAATTGAGTTTGGCAATGCGGTTGGCTTTATATTCTCTGCCAGGAGGGGCTTTTCCAGAAGCTAAGGACAATGATCAAGTTCTTGAAGAAAATCAACCTACAGAGACTAATGTTGGTTCAATTCGTGGCCCAACACAATTTATGTTTGAAACCGAAGTTGATCGTATCTTCTCTACGCCATTAGGTTCAACTTTGATGTTTGCTTCTCATGGGAACCAAATTGGACTAGTAAAGCTCATTCAAGGGTACAACTTATCAACTTCAACTGCCAATGGTCTTTATATATCCACCAAAAGTGATGGAACAAAGTCAATTAAGTTGAAAAAAAAAAAGAAATTGTACTTCAGCTTGCGCATAACACCTAGGTCTCTGGATATCCTTGCAAGAGGATCTACGGTCTGTGGAAATTTAGCTGTCTCTTTATCACAATTTGGCCCACAGTTCACCCAGAGATTATCCAAGATGTCCTCCCACATCTCATTTGTTCACCAGTTCAGGCAGTTGGCTTATGCTGTGTCGAATTCGGTTAAATCTCTAGTGCAAACACCTGAAATAGCACCAGTCCTTGCTAAAAGGTCTAGTTTTGAGCTACAGTCTCAACATGTTTCAGCCTCACTTTCTCAAAATACTATTGTGGAAAAGAATGATCAGCCACAATCAACCCCACACCACCACAATCTCCTATGTTTTGAGCCTGTTGAGAGCCAACATCCTGCTGAGGAATCAGATATTGAACTACTACCCGCCGTGAGAATGTTGAAGAAAAGATTGAAAGGCATGATAGAAATCAAACTGCCACCTCAAGGGAAATTGTGGTACAGTTCAATGTTGATATCGCTGAGGCTTATCATTGGATTTGTCACTGAATACTGTACCGGCGATACATACAGCCCTGTGCAAGATGTTGCTGATTCCTGCAGGACTGTCTTGATGCCATGTATGGTGTTGCTGTTTGCTACACTTGGAATGTTGAATACTATAGCAACCGGAGTAGCCATCGATGCATACAGTCTAATCAGTGACAATGCCGGAGTTGTTGCCGAGATGGCTGGAATGTGTCACAAAATTCGTGAGAGAACCGATGCTCTTGATGCTGCAGGAAACACAACTGCTGCCATTGGAAAGGGGTTTGCTATTGGTTATGCCGCCCTTGTGTCTTTGGCTCTTTTTGGTGCCTTTGTGAGCCATGCTGGTATTACAACAGTTGATGTCCTGACTCCCAAGGTTTTCATCGGTCTGATTGTGGGTGCCATGCTCTCTTACTGGTTTTCTGACCTGACCATGAAGAGTGTTGGAAGCGCAGCATTGAAGATGGTTGAGAAAGTTTGCAGGCAATTCAACATGATTCCCGGATTGATGGAGGGAACTGCGAAACCTGACTATGCCACATGTGCTACAATCACCACCTCAGATCCAAGTCATGGCTCTTGTCTATATCTTGGAAGTTTTGGCAACAAAAATAGCACCTTTGGCAACTTCACAGCACCATTAATGAATTCAAATTCCGATTCTTCAGCCTACAACATCCACAGCCGCAAATTGAGAATTAAAAGCCTTCTAATGGTGACAGGATTTCTAATACTGGGAGTGGTTTTGCTGTATTCGGTAGGGAATGAGTATACAACATTTGTTGGAGGAGGAGGTGTCTTTAATTCTTCTCAGAATGCTGCTGATGAGTATGACTTTGGAGACTTCGTCTTTCCTGACAGTGCTGTTTCGAGCTTTGGAAAAGCTCCGAACATTCCTGATATCGTAGAGAGTAGCCGCTACGTTACCTCTTCACCCGCGATCAGAGTTCGTTACCATAGCAAGTAA	2121	0.4253	MSHRNIIPWNTVIAGYLHNNMVEQANKLFDMIPGRDNFSWALMVTCYTRKGKLVKDLVSYNSMLAGYTQNRKLSLAMRFFVGKLVKDLVSYNSMLAGYTQNRKLSLAMRLALYSLPGGAFPEAKDNDQVLEENQPTETNVGSIRGPTQFMFETEVDRIFSTPLGSTLMFASHGNQIGLVKLIQGYNLSTSTANGLYISTKSDGTKSIKLKKKKKLYFSLRITPRSLDILARGSTVCGNLAVSLSQFGPQFTQRLSKMSSHISFVHQFRQLAYAVSNSVKSLVQTPEIAPVLAKRSSFELQSQHVSASLSQNTIVEKNDQPQSTPHHHNLLCFEPVESQHPAEESDIELLPAVRMLKKRLKGMIEIKLPPQGKLWYSSMLISLRLIIGFVTEYCTGDTYSPVQDVADSCRTVLMPCMVLLFATLGMLNTIATGVAIDAYSLISDNAGVVAEMAGMCHKIRERTDALDAAGNTTAAIGKGFAIGYAALVSLALFGAFVSHAGITTVDVLTPKVFIGLIVGAMLSYWFSDLTMKSVGSAALKMVEKVCRQFNMIPGLMEGTAKPDYATCATITTSDPSHGSCLYLGSFGNKNSTFGNFTAPLMNSNSDSSAYNIHSRKLRIKSLLMVTGFLILGVVLLYSVGNEYTTFVGGGGVFNSSQNAADEYDFGDFVFPDSAVSSFGKAPNIPDIVESSRYVTSSPAIRVRYHSK*	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g4005	706	Gene3D	Tetratricopeptide repeat domain	54	113	IPR011990	GO:0005515
	Psa5g4005	706	Gene3D	Tetratricopeptide repeat domain	1	53	IPR011990	GO:0005515
	Psa5g4005	706	PANTHER	K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP	383	412	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Psa5g4005	706	PANTHER	K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP	420	572	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Psa5g4005	706	Pfam	PPR repeat	58	80	IPR002885	-
	Psa5g4005	706	Pfam	PPR repeat	89	110	IPR002885	-
	Psa5g4005	706	Pfam	PPR repeat	9	32	IPR002885	-
	Psa5g4005	706	PANTHER	INORGANIC DIPHOSPHATASE, H+-TRANSLOCATING, VACUOLAR MEMBRANE	383	412	-	-
	Psa5g4005	706	PANTHER	INORGANIC DIPHOSPHATASE, H+-TRANSLOCATING, VACUOLAR MEMBRANE	420	572	-	-
	Psa5g4005	706	Pfam	Inorganic H+ pyrophosphatase	420	573	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g4005	Psa-Chr5	315407055	315410801	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g4005	384	581	Primary Pumps ATPases	AT1G15690	66.522	1.39e-84	278

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g4005	K23025		-	pop:18111071	283.108