Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3981 ATGGAATGGACATTGGGACCAAATCGAACTCAACTTCCACTACACCGAAGAAACATTCAGGATCCTCTATGTGATTCTAATTTTAGTGTTGGCCAGGATCGCCAAGTGATACCTTTGGCTGATTTGGAAGGAGTGCTTGATCCACAACCAGAGTTTTTGGACGCCTTGTTATGGGAGCCTGAATATGACATCGTGAGTGATGATAATGACTCTGAATACAATGTGAAGATTGATCCACAACCAGAGTTTTTGGACGCCTTGTTATGGGAGCCTGAATATGACATCGTGAGTGATGATAATGACTCTGAATACAATGTGAAGGAGGGTATAACTCTTGACAGTAGCGTGCAGTTGATTAGCCAGAGTACTAATCACAGCCTGCTCAATAGATTGGTGTCCTTTAATACTGCTGTTTGTTTTGCAATGATGGACATTCGCAACTTCATGCAATTTTACGTTGTTGACCTGAAAAATGAGCAGGTTGAGAAGAATGTCTGGGTGGTTGAGATGATTTGCAATCTAAAAAAAAACTTGCCTCCGAATTCCCACGGTGATGCGCTTATGTCAATGGCTGTGAATTTAAAGTTCAGTGAAGCGACAATGCAGGAGATCACTAAGATGGCAGCGGCAAAATTGTTTCGAACTCTACCGTGTTCGAATCATGATGAGAGCTCCAACATGCAACGGATAGTTTCAGCTCCAAGAATATACTCGGTGCTGGAGGTTTTGGCAAAACTTATTGACGGGGGAAGAAACAAGGCTTCTACGGAGTTTTCAATCTCTTTTCTTCAAACCCTGCTCATTGACGAACCAAAAGTTGTTTCAAAACTTCGCAATCTTATCGATGCTTTGGCAAAGCTTACTACAAAGCCTGGATACCCCGAATCGTTGCGACAACTCATTGAGATGATCAAGAATCCTGTTGCTTTATCTGCTAGTAATGCCGGAAAGGAAGATAAATTGAGGTTATCTAGAGACAATAAGGGTCCTAGTCTGCTAGTTGGAAACCGGGAAGAGTTAAACATTGTAGATTCTGCCAAACCTGATCCTGCTGGATTCCGTGACTACCCACTTCATCATACAGTTGCATCAGAGTGGGCTGCTCAAGGGGTTTATGGGGATAACTGCTCTTATATGTATCAAGGTTATGGATATACACCATATGGAGCGTATGCTTCACCCAATTCCTCCTCTCCAATGTTTCAACATGATGAAACAGGTTCTCTAGTAGTTCCTTTGTTTAAACCATGGATGGAGCAATTTTCTTCTATGCTGGAAATTCCAGTTCAGTCTGAAAATCCAGATGATTGGAGCATCAGAATGGAGGTTCTGAAATGTTTGAATCAGTTTATTCAGAATTTCTCAAGTCTAATTAAAAGTGACTTTGAGGCTGTGTGGGACGATCTGTTCTGTGATCTAACCGCCAGTTTGAGTAAGTTGCTCAATGTCTCGGATAATACATTTTGGAGAACAAGATGGGTTCATTTCAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTCAAGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGCTTGAGTAGAAGCTTCTTTCCTTTCATAGTGGCAGAGGAGGATGTTTTCTCAGAGATTCGTGTGCTTGAGCCTTTACTTGAACTAAGTGAAACTGATCCAAATATTGAAGGGACTGGAAAAATTAAAGCCAAAAGTCAAGCTAGGGATTTCATTCATGAAATGGGCTGGCTTCTTCATAGAAGTCAATTGAAATATAGGATGTTCCACTTGAGCTCTGATGTAGATCTCTTTCCATTAGAACGGTTCACGTGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGAACTGACAGAAATGGGCCTCCTTCACAAAGCCGTAAGGAGAAATATCAAAGCAGTTAGTAGAGTTTGCTCCGAGAGAATGTTACGCTCCAAGTTTCGGGGTCCTTTTGAACATACTCTTTTCGATGCTGTTGTAATTGATGAAGTTGCCCAAGCTCTTGAGCTAGCTACTCTAATTCCTCTTCAGCTTTTAAAATCAAATGAAACCCAATGTATTATGGTTGGTGACCCAAAGCAGCTTCCTGCAACTGTCTTATCAAATGTTGCAAGTAAATTTCGTTATGAGTGCAACATGTTTGGACGTTTACAAAAGGGGTGGGCATCCTGTTATTATGCTTACTGA 2208 0.4162 MEWTLGPNRTQLPLHRRNIQDPLCDSNFSVGQDRQVIPLADLEGVLDPQPEFLDALLWEPEYDIVSDDNDSEYNVKIDPQPEFLDALLWEPEYDIVSDDNDSEYNVKEGITLDSSVQLISQSTNHSLLNRLVSFNTAVCFAMMDIRNFMQFYVVDLKNEQVEKNVWVVEMICNLKKNLPPNSHGDALMSMAVNLKFSEATMQEITKMAAAKLFRTLPCSNHDESSNMQRIVSAPRIYSVLEVLAKLIDGGRNKASTEFSISFLQTLLIDEPKVVSKLRNLIDALAKLTTKPGYPESLRQLIEMIKNPVALSASNAGKEDKLRLSRDNKGPSLLVGNREELNIVDSAKPDPAGFRDYPLHHTVASEWAAQGVYGDNCSYMYQGYGYTPYGAYASPNSSSPMFQHDETGSLVVPLFKPWMEQFSSMLEIPVQSENPDDWSIRMEVLKCLNQFIQNFSSLIKSDFEAVWDDLFCDLTASLSKLLNVSDNTFWRTRWVHFRVQHQMAFIFNGQVPVTNGRGFIEIEDQGLSRSFFPFIVAEEDVFSEIRVLEPLLELSETDPNIEGTGKIKAKSQARDFIHEMGWLLHRSQLKYRMFHLSSDVDLFPLERFTWLMEFSMDHDWCAVELTEMGLLHKAVRRNIKAVSRVCSERMLRSKFRGPFEHTLFDAVVIDEVAQALELATLIPLQLLKSNETQCIMVGDPKQLPATVLSNVASKFRYECNMFGRLQKGWASCYYAY* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3981 735 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 509 622 IPR044817 GO:0003677
Psa5g3981 735 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 464 510 IPR044817 GO:0003677
Psa5g3981 735 Gene3D - 622 732 IPR027417 -
Psa5g3981 735 Pfam AAA domain 661 708 IPR041677 GO:0004386
Psa5g3981 735 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 509 622 - -
Psa5g3981 735 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 464 510 - -
Psa5g3981 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 724 IPR027417 -
Psa5g3981 735 SUPERFAMILY ARM repeat 126 489 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3981 Psa-Chr5 313762977 313767395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3981 506 639 SBP-box Gene Family AT2G47070 47.134 3.12e-32 131