Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3979 ATGGCCATGATCATGAGCATGATGAGGGTTGCATTTGATATCCCATCTGATATGGAAAAAAATATGGCTCATGATCATGCACAGGTTGTTCCTATAACACTCTTTGTCGCTGTTCTTTGCCTCTGTTTACTCATTGGTCACTTGCTTGAAGAAAGTCGATGGGTTAATGAATCTATTGTTGCCATTTTTGTTGGGTGCATTGCTGGAGTGGTTATATTGTTAATAACTCAGGGAAAAAGTTCTCGAATCCTTACATTTAATGAAGAAGTATTCTTCATATATCTCCTTCCTCCTATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAGTTCTTCCACAACTTTTTGACCATCATGCTGTTTGGAGTGGTCGGTGTTTTCATTTCAACATCTATTATTACTGGTGGCAGCTGGTGGCTGTTTCCCAAGTTGGGCTTCCCTTCCCTTACAGCGCTAGATTATCTCGCTTTAGGAGTAATTTTCTCCTCAACCGACACAGTATGTACGCTACAGGTTCTTAATCAAGAAGCTACTCCTTTACTATACAGCTTAGTCTTTGGGGAAGGAGTGGTAAACGATGCAACATCAGTTGTACTCTTCAATGCAGTCCAAAAGCTTGATGTTTCAAGACTTGACGGCAAGGCATTCCGTGTTATCGGTGATTTCTTGTATCTATTCGCAGCAAGCACTGCGCTTGGAGTCATAGCTGGACTTGTCACAGCATATATCTTGAAAGCGTTAACCTTTGGAAAACATTCAAGTGTTCGTGAAATTTCAATGATGATGTTAATGGCATATTTATCCACATGTTGGCAAGGTATTTGGATGCTCACTTATTTTCTACTTCAACTAAGTGGAATCCTTACTGTTTTCTTTTGTGGAATATCAATGTCACACTATGCATGGCATAATGTGACTGAAATTTCAAGAACCACAACCAGGCATGTGTTTGCAACAATGTCGTTTATTGCAGAAACTTTCATATTTCTTTATGTGGGTATGGATGCCCTTGACATTGAAAAGTGGAGGATGACCCACTTAAGATTTGGAAATTTGTTGGGAATTTACAGTTGCTTAATCTTCTTAATATTGCTCGGGAGGGCTGCATTTATATTCCCCCTCTCCGCACTTGTCAATTATATGAATAGGCGCGTCGAAGAAACACCGGGTATCACATTACAACACCAGATAATCATTTGGTGGGCTGGACTAATGAGGGGAGCAGTCTCCATCGCTTTGGCTTTCAAACAGTTCACGTTCTCTGGGGTTACTTCAGACCCGGTTAAAGCGACAATGATTACCAACACCATTATTGTTGTACTTTTCACTACACTGGTGTTTGGTTGTCTCACAAAACCACTTATTAGATATCTTCTTCCCCACCATGTAAGAAGGATAAACACCAGACATGAAGAATCATCGGAGCCGGGGTCACCAGTTGGGGACTTGAATCTACCTTTGCTATCCTTCCATGATCAACAGAAACCAACATTAGCCGCGCAAAGGAAAGCCTATCCATGTTAA 1527 0.4073 MAMIMSMMRVAFDIPSDMEKNMAHDHAQVVPITLFVAVLCLCLLIGHLLEESRWVNESIVAIFVGCIAGVVILLITQGKSSRILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVVGVFISTSIITGGSWWLFPKLGFPSLTALDYLALGVIFSSTDTVCTLQVLNQEATPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSRLDGKAFRVIGDFLYLFAASTALGVIAGLVTAYILKALTFGKHSSVREISMMMLMAYLSTCWQGIWMLTYFLLQLSGILTVFFCGISMSHYAWHNVTEISRTTTRHVFATMSFIAETFIFLYVGMDALDIEKWRMTHLRFGNLLGIYSCLIFLILLGRAAFIFPLSALVNYMNRRVEETPGITLQHQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVKATMITNTIIVVLFTTLVFGCLTKPLIRYLLPHHVRRINTRHEESSEPGSPVGDLNLPLLSFHDQQKPTLAAQRKAYPC* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3979 508 PRINTS Na+/H+ exchanger signature 90 101 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Psa5g3979 508 PRINTS Na+/H+ exchanger signature 104 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Psa5g3979 508 PRINTS Na+/H+ exchanger signature 119 127 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Psa5g3979 508 PRINTS Na+/H+ exchanger signature 159 169 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Psa5g3979 508 Pfam Sodium/hydrogen exchanger family 34 456 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Psa5g3979 508 PANTHER SODIUM/HYDROGEN EXCHANGER 18 496 IPR018422 GO:0006812|GO:0015299|GO:0016021
Psa5g3979 508 Gene3D - 151 203 - -
Psa5g3979 508 PANTHER SODIUM/HYDROGEN EXCHANGER 18 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3979 Psa-Chr5 313601080 313605352 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3979 20 505 Antiporters AT5G55470 65.914 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3979 - - gmx:100813332 714.146