Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3967 ATGGCGGAAATTGCAGTCTCATTAGTTATTGACCAACTACTTCCACTCTTAAGGGAAGAAGTGAAGCTGCTTAGAGGTATTCACAAGGAGTTTGCTGATATTAAAGATGAACTTGAAAGTATTCAAGCGTTCCTTAAGGATGCTGATAAAAGAGCTCCAACAACGGAAGGAGTCAAAATATGGGTGAAGCAAGTTAGGGAAGCAGCTTTTCGCATTGAAGATATCATTGACGAGTATATGATCCAGGTAGGACGGCAACCTCGTGATCATGGATGTGCATCTTTACTCCATAAGCTCAAAGCTATAATCTCTCGTCGTCGAATAGCGTCTGAGATTCAAGACATTAAGTCATATGTACGAGGGATCAAGGAAAGAAGTGAAAGATATGGCTTCCAACGTTCTCTTGAACAAGGATCAAGCAATTCTAGGAAAATCCAGAATTCTAAATGGCATGACCCTCGATTGGCTGCTCTTTACATGGAAGAATCTGAAGTGGTGGGTTTTGAAGAGCCAAGGAAAAGATTGATTGATTGGATGATAAAGGGAAGGGATGAGCGCACTGTAGTTTCTGTGGTAGGAATGGGAGGGCAAGGAAAAACCACTCTTGCTAAGAAAGTTTTTGACAGCAAGGATGTCCTCGGCCACTTCAATTGTCGTGTTTGGATCACAATATCTCAATCATATAATGTTGAAGAGTTGTTGAGGGAGATGCTGATAAAGTTATGCAAAGAAAAAGGAGACGGTGCTCCTAGGGAAATTTCTCAAATGGATCGAGGGTCATTGACCGAACAAGTGCGAAACTACTTGCAGCAAAAGAGGTACATCGTCGTGTTTGATGATGTTTGGAGTGTGCATTTTTGGGATGATATTGAATTTGCTGTAATTGATAATAAAAGTGGAAGTAGGATACTTATCACAACTAGGAACCAAAATGTTGTGGTTTCATGTAAAAAATCTTCTTTCACTAAGATGCTTGAATTGCAACCTCTAACTCAAGAACAATCTCTAGAGCTGTTCAATAAGAAGGCATTCAAATTTGACTATGACGGGTGCTGTCCAAAAGAGCTTACTGCTATAGCCAATGAAATTGTTCAAAAATGTAATGGCTTACCACTAGCAATTGTTGCCATTGGTGGTCTTTTGTCTACAAGAGAGAAAACTGGGTTTGAGTGGCATAGATTTAGAGAAAACCTGAGCTTAGAGCTAAAGAAAGATACAAATTTAATTGGGATAAAAGAAATTCTTGGTTTAAGCTATGATGATTTACCTTATTATCTCAAGTCATGCTTGTTGTATTTTGCAATATATCCAGAAGATTACGTAGTTAGATCAAAGAGAGTGATTCGTCACTGGATAGCGGAAGGGTTTGTGAAGGAGGAAAGAGGGAAGACATTGGAAGAAGTAGCAGAAGGATATTTAACGGAGCTGATCCATAGAAGCTTGGTGCAAGTATCCTCGCTTAGATATGATGGTAAGGTTAAACGTTGTCGTGTTCATGATCTAATACGCGATATGATGCTTGAAAAAACTGAGGATTTAAATTTTTGCAAGCATATTAGTGATGATGGACAATCAAACTTAAGTGGAATTGTTCGACGCTTGTTAGTAACTACCGAATTAAGAACGGGTCTTGATGATTTAAATTTGCATATTGAAAGGTTGCATGTTCGGTCATTGTTTTTTTTTAGAAATGATGCATCACGTTTCATGTATTTTTGGAGAATCCCTACAAAATTCAGGTTATTGAAGGTTCTTGATTATGAACTTGTGAAAGTATTCCATCCTCCTCATGAGGTTGGAAGTTTAATCCATTTGAAGTATTTAAGTTTCAATTATATTAGAGATGGTAAAATCCCAAAATCCATTGGCATGCTCCAGAACCTAGAGACCTTAGATGCAAGACATGCAGTGATTGAGTTGCCAAAGGAGATTAGCAAGCTTAGAAAGCTAAGACATCTTATCGGCTACCGAATATCTTTAATTCATTTAAAGAAAGGTATCGGAGATATGACATCCCTACAATCGCTTCGTAATGTTGATTTAAATATGGATGGAGTTGCAGAGGTAATAAACGAGTTAGGAAAGCTGAAACAGATGAGGGATTTGGGGTTGCTTAATGTTCATGAGGAAGATGGAAGCATTCTGTCTTCTTCAATCAACGAAATGAAACACTTGGAGAAACTAAACGTTGAATTATCTTTTCAAATTGCCAAAGTCGATTCCAGAGCTTCAGATCAAAGTAATAAATCCATTGGTTTGGATTTGATTTCCGCACCAATGATGCTTCGAAAACTTTCACTTTTGGGAATGTTAAAGAAGTTGCCAAAGTCGATTCCAGAGCTTCAGAATCTTGTTGTGTTGACGTTGACGCAGTCCTTATTAACTAAAGATCCAATGCAATTCCTAAAAAGTTTGCAGCACTTGTTGATCCTCTCTCTGACCCGCAATGCCTTTGAAGGTTTATCTTTGCATTTTGAAGATGGAGGGTTTGAGAAACTAAAGGAACTGTATGTTGAGGATTTATCTGAACTGAGAGTTATTATTATTGAAAGAGGAGCTCTTCCTTCTCTGAAAAAGCTTCAGTTACTCTCACTCAATCTCAAGAATTTACCCAAAGGAATCCTACACCTAGAGAAGCTTGAAGTTCTCAATATTGAGAGTGAAGATGATATTGAGCGGGACATTTATACCGAGGATTTGAGTTGGATCACGGAGCATATGCCGACTGTTAAAATTAACTATTTTGTTACATAA 2754 0.3802 MAEIAVSLVIDQLLPLLREEVKLLRGIHKEFADIKDELESIQAFLKDADKRAPTTEGVKIWVKQVREAAFRIEDIIDEYMIQVGRQPRDHGCASLLHKLKAIISRRRIASEIQDIKSYVRGIKERSERYGFQRSLEQGSSNSRKIQNSKWHDPRLAALYMEESEVVGFEEPRKRLIDWMIKGRDERTVVSVVGMGGQGKTTLAKKVFDSKDVLGHFNCRVWITISQSYNVEELLREMLIKLCKEKGDGAPREISQMDRGSLTEQVRNYLQQKRYIVVFDDVWSVHFWDDIEFAVIDNKSGSRILITTRNQNVVVSCKKSSFTKMLELQPLTQEQSLELFNKKAFKFDYDGCCPKELTAIANEIVQKCNGLPLAIVAIGGLLSTREKTGFEWHRFRENLSLELKKDTNLIGIKEILGLSYDDLPYYLKSCLLYFAIYPEDYVVRSKRVIRHWIAEGFVKEERGKTLEEVAEGYLTELIHRSLVQVSSLRYDGKVKRCRVHDLIRDMMLEKTEDLNFCKHISDDGQSNLSGIVRRLLVTTELRTGLDDLNLHIERLHVRSLFFFRNDASRFMYFWRIPTKFRLLKVLDYELVKVFHPPHEVGSLIHLKYLSFNYIRDGKIPKSIGMLQNLETLDARHAVIELPKEISKLRKLRHLIGYRISLIHLKKGIGDMTSLQSLRNVDLNMDGVAEVINELGKLKQMRDLGLLNVHEEDGSILSSSINEMKHLEKLNVELSFQIAKVDSRASDQSNKSIGLDLISAPMMLRKLSLLGMLKKLPKSIPELQNLVVLTLTQSLLTKDPMQFLKSLQHLLILSLTRNAFEGLSLHFEDGGFEKLKELYVEDLSELRVIIIERGALPSLKKLQLLSLNLKNLPKGILHLEKLEVLNIESEDDIERDIYTEDLSWITEHMPTVKINYFVT* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3967 917 CDD RX-CC_like 2 124 IPR038005 -
Psa5g3967 917 SUPERFAMILY L domain-like 497 888 - -
Psa5g3967 917 PANTHER DISEASE RESISTANCE PROTEIN RP 30 886 IPR044974 GO:0006952
Psa5g3967 917 PRINTS Disease resistance protein signature 188 203 - -
Psa5g3967 917 PRINTS Disease resistance protein signature 268 282 - -
Psa5g3967 917 PRINTS Disease resistance protein signature 367 381 - -
Psa5g3967 917 PRINTS Disease resistance protein signature 875 891 - -
Psa5g3967 917 Gene3D - 152 322 IPR027417 -
Psa5g3967 917 Pfam NB-ARC domain 172 421 IPR002182 GO:0043531
Psa5g3967 917 Pfam Rx N-terminal domain 5 88 IPR041118 -
Psa5g3967 917 Gene3D - 329 423 IPR042197 -
Psa5g3967 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 433 IPR027417 -
Psa5g3967 917 Gene3D - 425 510 IPR036388 -
Psa5g3967 917 Gene3D Ribonuclease Inhibitor 553 907 IPR032675 -
Psa5g3967 917 Gene3D - 4 112 - -
Psa5g3967 917 PANTHER - 30 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3967 Psa-Chr5 312987075 312989908 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3967 188 505 WRKY Transcription Factor Family AT5G45050 27.492 4.39e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3967 K13457 - gmx:100819372 879.782