Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3965 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACAGATGAGGAACGTCTCAGGGAGTATTTTGCGACATATGGGGAGGTGATTGAGGCTGTGATCATGCGAGATCGTGCAACGGGGCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCCGATCCTGCTGTTGCTGAGAGAGTCATTGTCGATAAGCACATAATCGATGGCCGCACTGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGAACAATATAAACAGACAGACTGGTAGTGTACAAGGATCGCCTGGTCCTGGTCGTACAAAGAAGATTTTTGTTGGAGGCTTACCGTCAACAATCACCGAAAGTGATTTCAAGATGTATTTTGATCAATTTGGTACAATTACCGATGTTGTTGTTATGTATGATCACAATACACAAAGGCCAAGAGGCTTTGGCTTCATCACATTTGATTCAGAGGAAGCTGTGGATAGAGTTCTTTACAAAACATTTCACGAACTTAATGGAAAGATGGTTGAAGTCAAAAGGGCCGTACCGAAAGAACTTTCCCCTGGTCCTGCCCGAAGCCCGTTGATAGGAGGATATAACTATAGTTTGAATAGTAGGGCAAGTAGTTACCTAAACAATTATGGTCAAGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGAATGGATAGTAGGTTTAGTCCGCTTACTGGTGGTAGAACCGGTTTTACCCCTTTCGGCAATACCGGTTATGGAATGGGGATGAATTTGGATTCTGGATTGAGCCCAAACTTTGGAGGGAACTCTAATTTTGGGAACAATTTGGGGTACGGTCGAATATTTAGTCCTTTCTATAGTGGCAACTCAAGCAGATATGCTACTCCGATAGGCTATAATGGAGGTAATGGAAGAGGCGATTCTCTTATGAACTCGACTTCTAGGAATGTCTGGGGTAATGGGGGACTGAGCAGTGCTAATAACCCGGTTAGCCCCGGTGCGTTCTTGGGATCTGGAAGCGGGGCATTCGGTGTTTCAATTGGAAACAGTGGCACAAACTGGGGTCCATCCATTCCAGCTCAGGGCGGAGGGGCTGCTTCCGGCTATGCTACTGGCAATAATGTTTACGAAGGCGGAGATAACAGCTTTGGATTAGGTGCTGCCGGGTATGGAAGAAACAGCAATGCAGTTGTGAATCCGTCCTCTACATTTAATGCATCGGCTGGCGGTTATGATGGATCGTATGGAGACTTATACCGCAGTGGCAGCGGTTCGGTTTACAATGACAATGCTTGGAGATCTGCCGCTTCTGAGATAGACGGTTCTGGCTCGTTCAGTTATGGTCTTGGTAGTATTGCATCCGACGATCCTGTGAAGACTTCTGAGGGTTATATCGGAGGCTACAATGTTGCAAGTAGACAACCTAATAGAGGAATCGCTGCTTAG 1446 0.4585 MESDLGKLFIGGISWDTDEERLREYFATYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPARSPLIGGYNYSLNSRASSYLNNYGQGYSMSPIGGYGVRMDSRFSPLTGGRTGFTPFGNTGYGMGMNLDSGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYNGGNGRGDSLMNSTSRNVWGNGGLSSANNPVSPGAFLGSGSGAFGVSIGNSGTNWGPSIPAQGGGAASGYATGNNVYEGGDNSFGLGAAGYGRNSNAVVNPSSTFNASAGGYDGSYGDLYRSGSGSVYNDNAWRSAASEIDGSGSFSYGLGSIASDDPVKTSEGYIGGYNVASRQPNRGIAA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3965 481 SUPERFAMILY RNA-binding domain, RBD 88 190 IPR035979 GO:0003676
Psa5g3965 481 Gene3D - 6 88 IPR012677 -
Psa5g3965 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Psa5g3965 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 481 - -
Psa5g3965 481 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Psa5g3965 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Psa5g3965 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Psa5g3965 481 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 481 - -
Psa5g3965 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Psa5g3965 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Psa5g3965 481 MobiDBLite consensus disorder prediction 81 101 - -
Psa5g3965 481 Gene3D - 103 189 IPR012677 -
Psa5g3965 481 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Psa5g3965 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Psa5g3965 481 MobiDBLite consensus disorder prediction 86 100 - -
Psa5g3965 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3965 Psa-Chr5 311778346 311781969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3965 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 28.796 5.60e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3965 K14411 - gmx:100805131 846.654