Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3955 ATGGCGGAAGTGGCTGTGTCATTAGTTATTGACCAACTACTACCGCTCTTAAGGGAAGAAGTGAAGCTGTTTAGAGGTATTCACAAGGAGTTTGCTGATATTAAAGATGAACTTGAAAGTATTCAAGCGTTCCTTAAGGATGCTGATAAAAAATCTGCAACAACTGAAGGAGTCAAAACATGGGTGAAGCAAGTTAGGGAAGCAGCTTTTCGCATTGAAGATATCATTGACGAGTATATGATCCAGGTAGGACAGCAACCTCGTGATCATGGATGTGCATCTTTACTCCATAAGCTCAAAGCTATAATCTCTCGGCGTCGAATAGCGTCTGAGATTCAAGACATTAAGTCATATGTACGAGGGATCAAGGAAAGAAGTGAAAGATATGGCTTCCAACGTTCTCTTGAACATGGACCAAGCAATTCTACGGAGATCCGGAATTCTAAATGGCATCACCCTCGATTGGCTGCTCTTTACATGGAAGAATCTGAAGTGGTGGGTTTTGAAGAGCCAAGGAAAAGATTGATTGATTGGATGGTAAAGGGAAGGGATGAGCGCACTGTAGTTTCTGTGCATCGCACTGTAGTTTCTGTGGTAGGAATGGGAGGGCAAGGAAAAACCACTCTTGCTAAGAAAGTTTTTGACAGCAAGGATCTAGTCCGCCACTTCGATTCTCGTGTTTGGATCACAGTCTCTCAATCATTTAATGTTGAAGACTTGTTGAGGGAGATGCTGATAAAGTTTTCCAAAGAAAAAGGAGACGGTGCTCCTAGGGATATTTCTCAAATGGATCGAGGGTCATTGACCGAACAAGTGCGAAACTACTTGCAGCAAAAGAGGTACATTGTGGTGTTTGATGATGTTTGGAGTGTACATTTTTGGGATGATATTCAATTTGCTGTAATTGATAATAAAAATGGAAGTAGGATATTTATCACAACTAGGAACCGAAATGTTGTGGTTTCTTGTAAAAAATCTTCTTTCACTGAGATGCTTGAATTGCAACCTCTAACTCAAGAACAATCTCTAGAGCTGTTCAATAAGAAGGCATTCAAATTTGACTATGACGGGTGCTGTCCAAAAGAGCTTACTGCTATAGCCAATGAAATTGTTCAAAAATGTAATGGCTTACCACTAGCAATTGTTACCATTGGTGGTCTTTTGTCTACAAGAGAGAAAACTGGGTTTGAGTGGCATAGATTTAGAGAAAACCTGAGCTTAGAGCTAAAGAAAGATACAAATTTAATTGGGATAAAAGAAATTCTTGGTTTAAGCTATGATGATTTGCCTTATTATCTCAAGTCATGCTTGTTGTATTTTGCAATATATCCGGAAGATTATGTGGTTAGATCAAAGACTCTGATTCGTCACTGGATAGCGGAAGGGTTTGTGAAGGAGGAAAGGGGGAAGACATTGGAAGAAGTAGCAGAAGAATATTTAACAGAGCTAATCCATAGAAACTTGGTGCAAGTATCCTCGCTTAGATATGATGGTAAGGTTAAACGCTGTCGTGTTCATGATCTAATACGCGATATGATTCTTGAAATCAATGAGGATTTAAATTTTTGCAAGCATATTAGTGATGATGAACAATCAAACTTAAGTGGAATTGTTCGACGCTTGTTAGTAACTACCGAATTAAGAACGGGTCTTGATGATTTAAATTTGCATATTGAAAGGTTGCATGTTCGGTCATTGTTTTTTTTTAGCAATGATCTAAGTTTCATGCATTTTTGGAGAATCCCTAAGAAATTCAGGTTATTGAAGGTTCTTGATTATGAACATCAGCGATTAGTCCCTCCTCCTCATGAGGTTGGAAGTCTAATCCATTTGAAGTATTTAAGTTTCAATTATATTATAAATGGTAAAATCCCAAAATCCATTGGCATGCTCCTGAACCTAGAGACCTTTGATGCAAGACATGCAGTGATTGAGTTGCCAAAGGAGATTAGCAAGCTTAGAAAGCTAAGACATCTTATCAGCCACCGAATATCTTTAATTCATTTAAAGAAAGGTATTGGAGAGATGACATCCCTACAAACGTTTCGTAATGTTGATTTAAATATGGATGGAGCTGCAGAGGTAATAAAAGAGTTAGGAAAGCTGAAACATTTAAAGAAAGGTATTGGAGAGATGACATCCCTACAAACGTTTCGTAATGTTGATTTAAATATGGATGGAGCTGCAGAGGTAATAAAAGAGTTAGGAAAGCTGAAACAGATGAGGGATTTGGGGTTGCTTAATGTTAATGAGGAAGATGGAAGCATTCTGTCTTCTTCAATCAATGAAATGAAACACTTGGAGAAACTAAATGTTCAATCCATTTGTTTGGATTTGATTTCTCCACCAACTATGCTTCGAAAACTTTCACTTGTTGGGAGGTTAAAGAAGTTGCCAAAGTCGATTCCAGAGCATCAGAATCTTGTTGTGTTGAGGTTAAAGAGGTCCTATTTATCCGAAGATCCAATGCAATCCCTAAAAAGTTTGCAGCACTTGTTGATCCTCTCTCTGACCCACAAAGCCTTTGAAGGTTTATCTTTGCATTTTGAAGATGGAGGGTTTGAGAAACTAAAGGAACTGTATGTTGAGGGTTTATCTGAATTGAGAGTTATTATTATCGAAAGAGGAGCTCTTCCTTCTCTGAAAAAGCTTCAGTTACTCTCGCTCTTCAATCTCAAGAATTTACCCAAAGGAATCCTACACCTAGAAAAGCTTGAAGTTCTGAATGTTCAGGTGGGCATTTATTACTAA 2751 0.382 MAEVAVSLVIDQLLPLLREEVKLFRGIHKEFADIKDELESIQAFLKDADKKSATTEGVKTWVKQVREAAFRIEDIIDEYMIQVGQQPRDHGCASLLHKLKAIISRRRIASEIQDIKSYVRGIKERSERYGFQRSLEHGPSNSTEIRNSKWHHPRLAALYMEESEVVGFEEPRKRLIDWMVKGRDERTVVSVHRTVVSVVGMGGQGKTTLAKKVFDSKDLVRHFDSRVWITVSQSFNVEDLLREMLIKFSKEKGDGAPRDISQMDRGSLTEQVRNYLQQKRYIVVFDDVWSVHFWDDIQFAVIDNKNGSRIFITTRNRNVVVSCKKSSFTEMLELQPLTQEQSLELFNKKAFKFDYDGCCPKELTAIANEIVQKCNGLPLAIVTIGGLLSTREKTGFEWHRFRENLSLELKKDTNLIGIKEILGLSYDDLPYYLKSCLLYFAIYPEDYVVRSKTLIRHWIAEGFVKEERGKTLEEVAEEYLTELIHRNLVQVSSLRYDGKVKRCRVHDLIRDMILEINEDLNFCKHISDDEQSNLSGIVRRLLVTTELRTGLDDLNLHIERLHVRSLFFFSNDLSFMHFWRIPKKFRLLKVLDYEHQRLVPPPHEVGSLIHLKYLSFNYIINGKIPKSIGMLLNLETFDARHAVIELPKEISKLRKLRHLISHRISLIHLKKGIGEMTSLQTFRNVDLNMDGAAEVIKELGKLKHLKKGIGEMTSLQTFRNVDLNMDGAAEVIKELGKLKQMRDLGLLNVNEEDGSILSSSINEMKHLEKLNVQSICLDLISPPTMLRKLSLVGRLKKLPKSIPEHQNLVVLRLKRSYLSEDPMQSLKSLQHLLILSLTHKAFEGLSLHFEDGGFEKLKELYVEGLSELRVIIIERGALPSLKKLQLLSLFNLKNLPKGILHLEKLEVLNVQVGIYY* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3955 916 Gene3D - 336 430 IPR042197 -
Psa5g3955 916 CDD RX-CC_like 2 124 IPR038005 -
Psa5g3955 916 Gene3D - 432 516 IPR036388 -
Psa5g3955 916 SUPERFAMILY L domain-like 504 910 - -
Psa5g3955 916 Pfam Rx N-terminal domain 5 88 IPR041118 -
Psa5g3955 916 Gene3D - 4 112 - -
Psa5g3955 916 Gene3D Ribonuclease Inhibitor 555 912 IPR032675 -
Psa5g3955 916 PANTHER - 23 910 - -
Psa5g3955 916 Gene3D - 151 329 IPR027417 -
Psa5g3955 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 440 IPR027417 -
Psa5g3955 916 PRINTS Disease resistance protein signature 195 210 - -
Psa5g3955 916 PRINTS Disease resistance protein signature 275 289 - -
Psa5g3955 916 PRINTS Disease resistance protein signature 374 388 - -
Psa5g3955 916 PRINTS Disease resistance protein signature 879 895 - -
Psa5g3955 916 PANTHER DISEASE RESISTANCE PROTEIN RP 23 910 IPR044974 GO:0006952
Psa5g3955 916 Pfam NB-ARC domain 191 428 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3955 Psa-Chr5 311088247 311091443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3955 195 450 WRKY Transcription Factor Family AT5G45050 29.167 1.55e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3955 K13457 - gmx:100819372 852.047