Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3954 ATGGCGGAAGTGGCTGTGTCATTAGTTATTGACCAACTACTACCGCTCTTAAGGGAAGAAGTCAACCTGTTTAGAGGTATTCACAAGGAGTTTGCTGATATTAAAGATGAACTTGAAAGTATTCAAGCGTTCCTTAAGGATGCTGATAAAAAATCTGCAACAACGGAAGGAGTCAAAACATGGGTGAAGCAAGTTAGAGAAGCAGCTTTTCGCATTGAAGATATCATTGATGAGTATATGATTCAGACTATTCTCTCTCGGCGTCGAATAGCCTCTGAGATTCAAGACATTAAGTCATATGTTCAAGGGATCAAGGAAAGAAGTGAAAGATATGGCTTCCAACGTTCTCTTGAACATGGACCAAGCAATTCTAGGGAGATCGGGAATTCTAAATGGCATCACCCTCGATTGGCTGCTCTTTACATGGAAGAATCTGAAGTTCTGGGCTTTGAAGAGCCAAGGAAAAGATTGATTGATTGGATGGTAAAGGGAAGGGATGAGCGCACTGTAGTTTCTGTGGTAGGAATGGGAGGGCAAGGAAAAACCACTCTTGCTAAGAAAGTTTTTGACAGCAAGGATCTAGTCCGCCACTTCGATTCTCGTGTTTGGATCACAGTCTCTCAATCATATAATGTTGAAGACTTGTTGAGGGAGATGCTGATAAAGTTTTCCAAAGAAAAAGGAGACGGTGCTCCTAGGGATATTTCTCAAATGGATCGAGGGTCATTGACCGAACAAGTGCGAAACTACTTGCAGCAAAAGAGGTACATCGTCGTGTTTGATGATGTTTGGAGTGTGCATTTTTGGGATGATATTGAATACGCTGTAATTGATAATAAAAGTGGAAGTAGGATACTTATCACAACTAGGAACCAAAATATTGTGGTTTCATGTAAAAAATCTTCTTTCACTGAGATGCTTGAATTGCAACCTCTAACTCAAGAACAATCTCTAGAGCTGTTCAATAAGAAGGCATTCAAATTTGACTATGACGGGTGCTGTCCAAAAGAGCTTACTGCTATAGCCAATGAAATTGTTCAAAAATGTAATGGCTTACCACTAGCAATTGTTACCATTGGTGGTCTTTTGTCTACAAGAGAGAAAACTGGGTTTGAGTGGCATAGATTTAGAGAAAACCTGAGCTTAGAGCTAAAGAAAGATACAAATTTAATTGGGATAAAAGAAATTCTTGGTTTAAGCTATGATGATTTGCCTTATTATCTCAAGTCATGCTTGTTGTATTTTGCAATATATCCGGAAGATTATGTGGTTAGATCAAAGACTCTGATTCGTCACTGGATAGCGGAAGGGTTTGTGAAGGAGGAAAGGGGGAAGACATTGGAAGAAGTAGCAGAAGAATATTTAACAGAGCTAATCCATAGAAACTTGGTGCAAGTATCCTCGCTTAGATATGATGGTAAGGTTAAACGCTGTCGTGTTCATGATCTAATACGCGATATGATTCTTGAAATCAATGAGGATTTAAATTTTTGCAAGCATATTAGTGATGATGAACAATCAAACTTAAGTGGAATTGTTCGACGCTTGTTAGTAACTACCGAATTAAGAACGGGTCTTGATGATTTAAATTTGCATATTGAAAGGTTGCATGTTCGGTCATTGTTTTTTTTTAGCAATGATCTAAGTTTCATGCATTTTTGGAGAATCCCTAAGAAATTCAGGTTATTGAAGGTTCTTGATTATGAACATCAGCGATTAGTCCCTCCTCCTCATGAGGTTGGAAGTCTAATCCATTTGAAGTATTTAAGTTTCAATTATATTATAAATGGTAAAATCCCAAAATCCATTGGCATGCTCCTGAACCTAGAGACCTTTGATGCAAGACATGCAGTGATTGAGTTGCCAAAGGAGATTAGCAAGCTTAGAAAGCTAAGACATCTTATCAGCCACCGAATATCTTTAATTCATTTAAAGAAAGGTATTGGAGAGATGACATCCCTACAAACGTTTCGTAATGTTGATTTAAATATGGATGGAGCTGCAGAGGTAATAAAAGAGTTAGGAAAGCTGAAACAGATGAGGGATTTGGGGTTGGTTAATGTTCATGAGGAAGATGGAAGCATTCTGTCTTCTTCAATCAATGAAATGCAACACTTGGAGAAACTAAATGTTAAATCCATTGGTTTGGATTTGATTTCTGCACCAACTATGCTTCGAAAACTTTCACTTGTTGGGAGGTTAAAGAAGTTGCCAAAGTTGATTCCAGAGCATCAGAATCTTGTTGTGTTGAGGTTAAAGAAGTCCTATTTATCCGAAGATCCAATACAATCAATAAAAAGTTTGCAGCACTTGTTGATCCTCTCACTTAGCCACTTTGCTTATGAAGGTTCACATTTGCATTTTGAAGATGGAGGGTTTCAGAAACTAAAGGAACTGTATGTTGAGGATTTGTTTCATTTGAGAGTTATTATTATTGAAAGAGGAGCTCTTCCTTCTCTGAAAAAGCTTCAGTTACTCTCGCTCTTCAATCTCAAGAATTTACCCAAAGGAATCCTACACCTAGAAAAGCTTGACGTTCTGAATGCTGAGCAGGGCATTTATACTGAGGATTTGAGTTGGATCACGGAGCATATGCCGACTGTTAAAATAAATTATTATGTTACTTAA 2628 0.379 MAEVAVSLVIDQLLPLLREEVNLFRGIHKEFADIKDELESIQAFLKDADKKSATTEGVKTWVKQVREAAFRIEDIIDEYMIQTILSRRRIASEIQDIKSYVQGIKERSERYGFQRSLEHGPSNSREIGNSKWHHPRLAALYMEESEVLGFEEPRKRLIDWMVKGRDERTVVSVVGMGGQGKTTLAKKVFDSKDLVRHFDSRVWITVSQSYNVEDLLREMLIKFSKEKGDGAPRDISQMDRGSLTEQVRNYLQQKRYIVVFDDVWSVHFWDDIEYAVIDNKSGSRILITTRNQNIVVSCKKSSFTEMLELQPLTQEQSLELFNKKAFKFDYDGCCPKELTAIANEIVQKCNGLPLAIVTIGGLLSTREKTGFEWHRFRENLSLELKKDTNLIGIKEILGLSYDDLPYYLKSCLLYFAIYPEDYVVRSKTLIRHWIAEGFVKEERGKTLEEVAEEYLTELIHRNLVQVSSLRYDGKVKRCRVHDLIRDMILEINEDLNFCKHISDDEQSNLSGIVRRLLVTTELRTGLDDLNLHIERLHVRSLFFFSNDLSFMHFWRIPKKFRLLKVLDYEHQRLVPPPHEVGSLIHLKYLSFNYIINGKIPKSIGMLLNLETFDARHAVIELPKEISKLRKLRHLISHRISLIHLKKGIGEMTSLQTFRNVDLNMDGAAEVIKELGKLKQMRDLGLVNVHEEDGSILSSSINEMQHLEKLNVKSIGLDLISAPTMLRKLSLVGRLKKLPKLIPEHQNLVVLRLKKSYLSEDPIQSIKSLQHLLILSLSHFAYEGSHLHFEDGGFQKLKELYVEDLFHLRVIIIERGALPSLKKLQLLSLFNLKNLPKGILHLEKLDVLNAEQGIYTEDLSWITEHMPTVKINYYVT* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3954 875 Gene3D - 4 110 - -
Psa5g3954 875 Gene3D - 133 304 IPR027417 -
Psa5g3954 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 415 IPR027417 -
Psa5g3954 875 CDD RX-CC_like 2 106 IPR038005 -
Psa5g3954 875 PANTHER DISEASE RESISTANCE PROTEIN RP 23 849 IPR044974 GO:0006952
Psa5g3954 875 Gene3D Ribonuclease Inhibitor 531 868 IPR032675 -
Psa5g3954 875 Pfam NB-ARC domain 154 403 IPR002182 GO:0043531
Psa5g3954 875 PRINTS Disease resistance protein signature 170 185 - -
Psa5g3954 875 PRINTS Disease resistance protein signature 250 264 - -
Psa5g3954 875 PRINTS Disease resistance protein signature 349 363 - -
Psa5g3954 875 PRINTS Disease resistance protein signature 818 834 - -
Psa5g3954 875 Gene3D - 311 405 IPR042197 -
Psa5g3954 875 SUPERFAMILY L domain-like 479 850 - -
Psa5g3954 875 PANTHER - 23 849 - -
Psa5g3954 875 Gene3D - 407 491 IPR036388 -
Psa5g3954 875 Pfam Rx N-terminal domain 5 87 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3954 Psa-Chr5 311064495 311067433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3954 170 425 WRKY Transcription Factor Family AT5G45050 28.788 6.91e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3954 K13457 - gmx:100819372 857.055