LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g3953	ATGGATGCCGCCGGTGAACCTCAATTCCGGCAACAAACTCTCCGCGAGATGGAAGATAAACACCACGATCCAAATCAAACTGGGATAAAACCGGATTCTGCTTCCGACGGACCTTCCGCCTCCGGAAACACCACCGGAGCTAGATACAAGCTCATGTCCCCGGCCAAGCTCCCGATCTCTAGGTCGCCGGTTTTAACTATTCCTCCGGGACTAAGTCCGACTTCCTTTCTAGAATCACCAGTGCTACTCTCAAATATGAAGGTAGAACCGTCGCCTACAACAGGTTCTCTTCCTAGGCTTCAACAAACATCACATAGTTTTATGACTTCTTTCATGTCTGCTACGTTTCCTGTAACCACTGTATGCTACAATACTAATCCTGTTGATGACGGAAAATCCAGCTTCTTTGAATTTAAACCGCACAATAGATCAAATATGGTTCCTGCTAACTTTGACAACCATGCATGTGAAAAATCTACTCAAATTGATGGTCAAGAAAAAGTTCAAACTTTTGTTTCTTTACCATTGGTCAAAAGTGAAATGGCAGTCCCTTCAGATGAAATAAATCTATCATCATCACCTCTTCAAATGGTTAGCTCAGGGGCCAGTGCTCATGTTGAAGTCGAGTTGGACGAATCAAACCCCAGTGGTAACATAGCAACTGGGCTTCAGGCATCGCAAGTCGATGGTAGGGGCAATGGACTTTCAGTTGCTGCTGACAAGGTGTCTGATGATGGATACAATTGGCGAAAATATGGACAGAAGCTTGTTAAAGGGTGTGAATTTCCACGCAGTTATTACAAATGCACACACCCTAACTGCGAAGTGAAGAAACTCTTTGAACGCTCTCATGATGGCCAAATCACTGAGATAGTTTACAAAGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGTGGAAATATTATGTCTGTGCAAGAAGAGAGATCTGATAGGGCTTCTTTGACTAGCCGTGACGACAAAGGCTTTAATAACTATGGTCAGATGTCTCATGCAGCTGAGCGTGACAGTACCCCAGAGCTATCGCCTATAGCAACAAACAATGATAGTCCAGAGGGTGCAGGATTTTTGCCAAACCGGAATAATGATGAGGCTGATGAAGATGATCCTTTCTCAAAGCGAAGAAAAATGGATCTTGACATCATTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAGACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACAAACGCCGGTTGCCCGGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCTGTAATTACAACATACGAGGGTAAACACAATCATGACGTACCAACTGCAAGGAACAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGTCAAGCAAGAATTCGGCACGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCATTAGCCCGAACGCTGAAAATAGATCAAACAGTCAAGGGAGGATGATGATGATGCGTAATGAATACAGTGACGGCCAAACTCACACCCACACCGGTAATTCCAGTTTCAAGTTTGTTCATACTGCACCGCCTCCGGGATACTTTGGTGTACTAAATAACAACTCAAATCCATATGGCTCTAGAGAAAATCCAAGTGATAGTTATCCTTGCCCACAGAACATGGGAAGAATACTAATGGGTCCGTAA	1779	0.4469	MDAAGEPQFRQQTLREMEDKHHDPNQTGIKPDSASDGPSASGNTTGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTSHSFMTSFMSATFPVTTVCYNTNPVDDGKSSFFEFKPHNRSNMVPANFDNHACEKSTQIDGQEKVQTFVSLPLVKSEMAVPSDEINLSSSPLQMVSSGASAHVEVELDESNPSGNIATGLQASQVDGRGNGLSVAADKVSDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNIMSVQEERSDRASLTSRDDKGFNNYGQMSHAAERDSTPELSPIATNNDSPEGAGFLPNRNNDEADEDDPFSKRRKMDLDIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGQARIRHEESDTISLDLGMGISPNAENRSNSQGRMMMMRNEYSDGQTHTHTGNSSFKFVHTAPPPGYFGVLNNNSNPYGSRENPSDSYPCPQNMGRILMGP*	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g3953	592	MobiDBLite	consensus disorder prediction	292	312	-	-
	Psa5g3953	592	ProSiteProfiles	WRKY domain profile.	410	475	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	39	576	IPR044810	GO:0003700
	Psa5g3953	592	MobiDBLite	consensus disorder prediction	12	27	-	-
	Psa5g3953	592	MobiDBLite	consensus disorder prediction	1	46	-	-
	Psa5g3953	592	Gene3D	WRKY domain	400	476	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	Gene3D	WRKY domain	236	303	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	ProSiteProfiles	WRKY domain profile.	238	302	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	SMART	WRKY_cls	415	474	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	SMART	WRKY_cls	243	301	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	Pfam	WRKY DNA -binding domain	416	472	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	Pfam	WRKY DNA -binding domain	244	300	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	39	576	-	-
	Psa5g3953	592	MobiDBLite	consensus disorder prediction	28	46	-	-
	Psa5g3953	592	SUPERFAMILY	WRKY DNA-binding domain	241	302	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	SUPERFAMILY	WRKY DNA-binding domain	407	475	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Psa5g3953	592	MobiDBLite	consensus disorder prediction	358	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g3953	Psa-Chr5	310926289	310931062	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g3953	52	592	WRKY Transcription Factor Family	AT4G26640	54.025	5.69e-179	514

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Psa5g3953		WRKY	1.5e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g3953	-		-	gmx:100781491	896.73

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g3953	5	310926289	310931062	Psa5g3953	5	310926289	310931062	ECH
	Psa5g3953	5	310926289	310931062	Psa2g0217	2	8098650	8102836	PCT