Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3952 ATGCAAACATCACAGAAACATGAAATTTCGTTCGGCTGTGACACGTTCTACGTTGAGCCTGTGCAGAATATCGAGTCATATTGCTTACCTTCCGGTGAGAATCTTGACAACTATTCTTCCTCCGATAACAGCAGTCGAACATTCTATCCTTCTCATCAGACTCTAGAACCGTATAGCGCCCATGAATCTGCTTCAACTAGTAATAACAGTTTCCCTTACCAAAATTCTCCGACCACTCTCAGTTTCTCTCGGAACAATAGTCCGGTGTCGAAGCTGGAGTCGAATTCACGCGTGATAAGCCAACAAAATTCTCTTGAATTTGTTAATGGTTCACCTGAGGACGACGATTCTTACTTGACACAACATGATTTTGATGACCTCAGGCATAAGATACAAGAGCTCAAATCTGCTATGCTCGGACCGAATGCAGATATGCTAGATTTGTACGATACTGAAATTCGAGAAGAGTCTGGTTCGTTCTCGTTAGAGGCGGAAAACTGGAAGAGAAATGTTGAGATGGTATCGAGAGGGGACTTGAAAGAAATGCTTTATACTTGTGCAAAAGCAGTAGCTGTGAATGATATGGACACAATTGAATGGATGGTTACCGAGTTACGCAAAATCGTATCCATTTCAGGAAGTCCAATCCAACGATTGGGAGCGTACATGTTGGAGGCTCTTGTTTCCAGGATGGCTTCTTCCGGAAGTACAATCTACAAATCGTTAAAATGTAGCGAGCCTACCGGTAATGAACTACTTTCCTACATGCATGTACTTTATGAAATATGTCCGTACTTTAAGTTTGGGTATATGTCGGCAAATGGAGCGATTGCGGAAGCTATGAAGGACGAAAGTGAAATACACATAATTGATTTTCAAATTGCACAAGGGACTCAGTGGGTGAGCCTAATTCAGGCTCTTGCTCGCCGGCCTGAAGGACCCCCGAAGATCAGAATAACGGGTATTGATGACTCGTATTCAGCTTACGCCCGCGGTGGCGGTGTTGATATAGTGGGGGAAAGGTTATCTGCACTTGCACAGTCGTGTCATGTTCCTTTCGAGTTCCATGCTGTTAGAGTTTCCGCTTCTGAGGTCCAACTAGAAGACTTTGAACTTCGACCTTACGAAGCCGTGGCGGTGAATTTTGCCATTATGCTACACCATGTGCCAGATGAAACCGTGAACATTCATAATCATCGCGACAGGCTGTTGCATTTGGCTAAATATTTCGCTCCTAAGGTGGTGACTCTAGTCGAGCAAGAATTCAACACCAACAACGCCCCGTTCTTGCAGCGTTTTGCCGAGACAATGAACTACTACTCAGCCGTCTACGAATCAATCGACGTCGTTCTTCCAAGGGATCACAAAGAGAGGATTAACGTCGAACAGCACTGTCTGGCTCGAGAAGTTGTCAACTTAGTAGCCTGCGAAGGGGAAGAAAGAGTGGAACGTCACGAGCTTCTAACTAAGTGGAAAACACGTTTCGCAAGGGCTGGATTCACGCCTTATCCGTTGAGCTCGTTCATCAACTCTTCAATCAAGAATCTTCTGGATAGCTACCGCGGACATTACACTCTAGAAGAGAGAGATGGTGCACTATATCTAGGTTGGATGAATCAAGCTCTTATTGCTTCTTGTGCGTGGAGATGA 1650 0.4479 MQTSQKHEISFGCDTFYVEPVQNIESYCLPSGENLDNYSSSDNSSRTFYPSHQTLEPYSAHESASTSNNSFPYQNSPTTLSFSRNNSPVSKLESNSRVISQQNSLEFVNGSPEDDDSYLTQHDFDDLRHKIQELKSAMLGPNADMLDLYDTEIREESGSFSLEAENWKRNVEMVSRGDLKEMLYTCAKAVAVNDMDTIEWMVTELRKIVSISGSPIQRLGAYMLEALVSRMASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKDESEIHIIDFQIAQGTQWVSLIQALARRPEGPPKIRITGIDDSYSAYARGGGVDIVGERLSALAQSCHVPFEFHAVRVSASEVQLEDFELRPYEAVAVNFAIMLHHVPDETVNIHNHRDRLLHLAKYFAPKVVTLVEQEFNTNNAPFLQRFAETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLTKWKTRFARAGFTPYPLSSFINSSIKNLLDSYRGHYTLEERDGALYLGWMNQALIASCAWR* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3952 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 548 IPR005202 -
Psa5g3952 549 Pfam GRAS domain family 179 549 IPR005202 -
Psa5g3952 549 ProSiteProfiles GRAS family profile. 170 549 IPR005202 -
Psa5g3952 549 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 548 - -
Psa5g3952 549 MobiDBLite consensus disorder prediction 57 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3952 Psa-Chr5 310921663 310924837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3952 1 549 GRAS Transcription Factor Family AT1G50600 55.154 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g3952 GRAS 7.1e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3952 - - gmx:100785400 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3952 5 310921663 310924837 Psa5g3952 5 310921663 310924837 ECH
Psa5g3952 5 310921663 310924837 Psa2g0215 2 8071548 8074899 PCT