Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3949 ATGACTAAACACGCCCCTCTTGAAGAGCCCCTTTTGAAGGATTCTGATTCCAAAAAGGCAGGAGGAAATGAAATTTTAACAGGTTATTTGAATGCTGGATTTTTTAGCATTCTTACTTTCTCATGGATGACTCCACTTATAACATTAGGGAGTAAAAAAACTTTAAACCATCAAGACCTTCCACTTCTTTCTGCCAATGACACTGCCTATGGATCTTTTTCAACTTTTACAAAAAACCTTGAGTTAGAGTGTGGTAATGTTAGGACTGTGACCACTATTAAACTCGCTAAGGTGCTGTTTTTATCAACATGGAAAGGGATTCTTATATCTGGCATATTTGCATTTTTGTACGTATGTGCTTCTTATGTAGGTCCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAATATGATGGCTATGTTTTGGCTACGGCGTTTATTATGGCGAAACTTGTCGAGTTTCTTTCGCAAAGGCACTTGATGTTTAAGTTCCGACAGGTTGGTGTTAGGATGCAATCAATGTTGGTGTCAATGATCTATGCTAAAGGATTGACACTTTCGTGTCAATCAAAAGAGGGACGTAGCAGTGGCGAAATCATCAACTTAATGACTGTTGATGCTCAAAGGGTAGGTGAGTTTTGTTGGTATTTGCATGATCCATGGATGTCTGTTCTACAAATTTCTTTGGCTTTGTTTATTCTTCATAGAAATGTCGGGGTTGCTTCAGTAGCTTCTTTTGCTGCAACTGTTATTGTTATGTTGCTAAACCTTCCTATGGCATCCTTACAAGAGAAGTTCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCGACATCTGAGGTTCTAATGAACATGAGGATTCTTAAACTTCAAGCGTGGGAGATGAAGTTCTTAGCAAAGATTATTCAGCTTAGGAAGTTAGAGGAGATGTGGCTAAAGAAATTTCTTGTTGTTACCGCAATTGTTAGATTTCTCTTCTTTAGCGCCCCAACATTTGTTGCTGTTGTTACTTTCGGTGCTTGTGTTCTTCTAGGCATTCCACTTGAAACAGGAAAGATCTTATCTGCTCTTGCAACATTCAGAATTCTTCAATTGCCTATCTATAATATTCCCGACACAATTTCAGCAATTGCACAAACCAAAGTTTCCCTCGATAGGGTTGTCGCTTTTCTTCGTCTAGATGATTTGCAGACAGATGTGGTGGAGAAGGTTCCGCGAGGTAGTTCTGATATAGCAATTGAAATAGTTGATGGAAATTTCTCTTGGGATTTATCTTCTGTCAATGCAACGTTGAAAAACATAAATCTTAGAGTTTTTCATAGTACGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTAGTTTCTTGTATAATAGGTGAAATACCAAAGATATCTGGTACCTTGAAGGTGTGTGGAACAAAAGCTTATGTTGCTCAATCACCATGGATACAGAGTGGAAAGATACAAGAGAACATACTATTTGGAAGAGAGATGGATAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCAATGAAGAAAGACTTGGAGGTTCTACCATTTGGTGATCAGACCATTATTGGCGAAAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCGCGAGCTCTTTATCAAGATGCTGATATATATCTACTCGATGATCCCTTTAGTGCCGTTGATGCTCATACAGGATCCCATCTTTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTATCTGACGCTGATCTGATACTTGTCATAAAAGAAGGAAGGATAACTCAATCAGGAAAATACAATGATATTCTTACATCAGGAACCGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCATTCTCTTCAGTTAAGTCTTTAGAGAGAGGGCCTACACTTAAATCATCGAGTATTACCGGAGAAGACACAAGCTCATTAAGCGATTTTGAACTTGAGCAAGAAGTGGAAAACATAAATGATCGAAACAGCATGTTAGAGGAAACAATTGTGCCGAAAGGCCAACTTGTTCAAGACGAAGACCGTGAAAAGGGTAGTGTTGGGTTTAAAGTGTTCTGGAAATACACAACAATAGCTTATGGAGGAGCTCTTGTACCTCTCCTATTTCTTTCACACATACTCACCGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGGTATTGGAATCTTTACTCTGATGGTTGTCTATGTTTCTTTGGCAATTGGAATTTCCTTTTCCACCCTTGTCAGAGCTTTTCTTGCCGTGATAGCTGGATACAAGACTGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCTTTCGAGCGCCAATGTCATTTTTCGATTCCACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGGCAGACCAAAGTACAGTAGATATGAACATTTCAAATCTAGTATGGGAATTTACCTACAATCTGGTTCAGCTCGTGGGAAATATTGCTGTGATGTCACAAGCTGCATGGCAGGTGTTCGTAGTATTGATTCCTGTCGTGGCAGCTTGCATATGGTACCAGCGATACTACTCAGCATCAGCACGGGAATTGGCACGATTAACTGGTATATGCCAAGCACCAGTTATACAACATTTTTCAGAAACGATATCCGGATCAACAACCATAAGATGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGAAATTGATAGACAAATATTCCCAACCTAAATTATACAGTTCTAGTGCATTGGAATGGTTGAGTTTCAGATTGGGTATTTTATCCTCTACCATATTTGCCTTCTGCTTAATTTTCTTGGTATCTTTTCCAAGTTCAATTGCCGATCCTAGCATTGTGGGATTGGCTGTGACATATGGGATTAGTCTAAATGCTGTACAATTCAAATTAATTAGGTTTCTTTGCAATTTGGAGAGCAATATTATATCTGTAGAAAGAATACTTCAATACACTTCCATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCGTTCGGAGAGGTTCGTATCCAGGATTTACAGGTTCAATATGCCCTCACTTGCTCTTGTTTTACGCGGACTTACGTGCACTTTTACTGCTGGAACAAAAACTGGCATTGTGGAGAACAGGAATGGAAAACAACTCTAGTGCAAGCACTTTTAGACTTACTAAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAACTAACCTCGACCCGCTAGAAGAGTACACAGATGAACAAATTTGGGAGGCTCTTGATATGTGTCAACTTGGAGATGAAGTGAGAAAGAAAGAAGGAAAACTTGACTCCACAGTTACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGGCAGTTAGTCTGCCTCGGCCGTGTTCTACTTAAGAAAAGCGAGATCTTGGTGCTCGATGAAGCTACTGCATCAGTTGATATGGCTATGGATAATACAATTCAACAGACAGTTAAGCAACATTTCTCTGATTGCACGGTCATCACCATTGCTCATAGAATAACTTCAATCCTCGATAGCGACATGGTTTTGTTTCTCAGTAAAGGGCTTATTGAGGAATATGATTCACCAAAGAAGTTGCTTAAGGACAAATCTTCTTCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACACTGGTTTTGGAAGTTAA 3813 0.3916 MTKHAPLEEPLLKDSDSKKAGGNEILTGYLNAGFFSILTFSWMTPLITLGSKKTLNHQDLPLLSANDTAYGSFSTFTKNLELECGNVRTVTTIKLAKVLFLSTWKGILISGIFAFLYVCASYVGPYLIDNLVQYLNDENKVKYDGYVLATAFIMAKLVEFLSQRHLMFKFRQVGVRMQSMLVSMIYAKGLTLSCQSKEGRSSGEIINLMTVDAQRVGEFCWYLHDPWMSVLQISLALFILHRNVGVASVASFAATVIVMLLNLPMASLQEKFQAKLMEFKDKRMKATSEVLMNMRILKLQAWEMKFLAKIIQLRKLEEMWLKKFLVVTAIVRFLFFSAPTFVAVVTFGACVLLGIPLETGKILSALATFRILQLPIYNIPDTISAIAQTKVSLDRVVAFLRLDDLQTDVVEKVPRGSSDIAIEIVDGNFSWDLSSVNATLKNINLRVFHSTRVAVCGTVGSGKSSLVSCIIGEIPKISGTLKVCGTKAYVAQSPWIQSGKIQENILFGREMDREKYEKVLEACSMKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLSDADLILVIKEGRITQSGKYNDILTSGTDFMELVGAHRAAFSSVKSLERGPTLKSSSITGEDTSSLSDFELEQEVENINDRNSMLEETIVPKGQLVQDEDREKGSVGFKVFWKYTTIAYGGALVPLLFLSHILTVVLQIASNYWMALATPVSATAEPGIGIFTLMVVYVSLAIGISFSTLVRAFLAVIAGYKTATMLFNQMHLSFFRAPMSFFDSTPSGRILNRASADQSTVDMNISNLVWEFTYNLVQLVGNIAVMSQAAWQVFVVLIPVVAACIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRCFEQESRFNEMNMKLIDKYSQPKLYSSSALEWLSFRLGILSSTIFAFCLIFLVSFPSSIADPSIVGLAVTYGISLNAVQFKLIRFLCNLESNIISVERILQYTSIPSEAPLVIKDNQPDHSWPSFGEVRIQDLQVQYALTCSCFTRTYVHFYCWNKNWHCGEQEWKTTLVQALLDLLSIIPQDPTMFEGTVRTNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSEILVLDEATASVDMAMDNTIQQTVKQHFSDCTVITIAHRITSILDSDMVLFLSKGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3949 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 735 1015 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3949 1270 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 6 1269 - -
Psa5g3949 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 645 IPR003439 GO:0005524
Psa5g3949 1270 ProSitePatterns ABC transporters family signature. 547 561 IPR017871 GO:0005524
Psa5g3949 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 977 1258 IPR003439 GO:0005524
Psa5g3949 1270 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 6 1269 - -
Psa5g3949 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 644 IPR027417 -
Psa5g3949 1270 SUPERFAMILY ABC transporter transmembrane region 733 1034 IPR036640 GO:0005524|GO:0016021
Psa5g3949 1270 CDD ABC_6TM_ABCC_D1 109 396 IPR044746 GO:0140359
Psa5g3949 1270 Pfam ABC transporter 1088 1189 IPR003439 GO:0005524
Psa5g3949 1270 Pfam ABC transporter 440 574 IPR003439 GO:0005524
Psa5g3949 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 388 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3949 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1088 1249 IPR027417 -
Psa5g3949 1270 Pfam ABC transporter transmembrane region 108 373 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3949 1270 Pfam ABC transporter transmembrane region 735 978 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3949 1270 Gene3D ABC transporter type 1, transmembrane domain 697 1033 IPR036640 GO:0005524|GO:0016021
Psa5g3949 1270 Gene3D ABC transporter type 1, transmembrane domain 87 401 IPR036640 GO:0005524|GO:0016021
Psa5g3949 1270 SMART AAA_5 1090 1235 IPR003593 -
Psa5g3949 1270 SMART AAA_5 449 624 IPR003593 -
Psa5g3949 1270 SUPERFAMILY ABC transporter transmembrane region 102 401 IPR036640 GO:0005524|GO:0016021
Psa5g3949 1270 CDD ABC_6TM_ABCC_D2 733 1027 IPR044726 GO:0140359
Psa5g3949 1270 Gene3D - 1035 1260 IPR027417 -
Psa5g3949 1270 Gene3D - 402 658 IPR027417 -
Psa5g3949 1270 CDD ABCC_MRP_domain1 422 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3949 Psa-Chr5 310737972 310744001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3949 403 673 Calmodulin-binding Proteins AT2G36910 30.104 6.04e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3949 - K05666 gmx:106794105 1893.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3949 5 310737972 310744001 Psa5g3949 5 310737972 310744001 ECH