Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3948 ATGACTAAACGTGCTCTTGAAGAGTCCCTTTTGAACGGTGAAGCTAGTGTAAGCAACAACAGTTCTGATTCCAAAAAGTTAGGAGGAAATGAAATTTTAACAAGTTATTTGAATGCTGGATTTTTTAGTATTCTTACTTTCTCATGGATGACTCCACTAATAACATTAGGGAGTAAAAAGACTTTAAACCATCAAGACCTTCCACTTCTTTCTACCAATGACACTGCCTATGGATCTTTTTCAACTTTTAGAAAAAACCTTGAGTTAGAGTGTGGTAATGTTATTAGTACTGTGACAACTATTAAGCTCGCCAAGGTGCTTTTTTTATCGACATGGGAAGGGATTCTTATATCTGGCATATTTGCATTTTTGTATGTATGTGCTTCTTATGTAGGTCCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAAAATGAAGGCTATGTTTTGGCTACGGCGTTTGTTGTGGCAAAACTTGTTGAGTGTCTTTCGCAAAGACACTCAATGTTTAAGTACCAACAGGTTGGCGTTAGGATGCAATCAATGTTGGTGTCAATGATCTATGCTAAAGGATTGACAATTTCATGTCAATCAAAAGAGGGGCATAGCAGTGGCGAAATCATCAACTTAATGACTGTTGATGCTCAAAGGATAAGTGAATTTTGTCTGTCTATGCATGATCCATGGATGGCGGTTCTACAAATTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTCGGGGTTGCTTCAGTAGCTGCTTTTGCTGCAACTATTATTGTTATGTTGCTAAACCTTCCTATGACTTCACTGCAAGAGAGATTGCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCAACGTCTGAGGTTCTAATGAACATGAGGATTCTTAAACTTCAAGCGTGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTCAGGAAGTTAGAGGAGATGTGGCTAAAGAAATTTCTTGTTGGTACAGCAATTGTTAGATTTCTCTTTTTTAGCGCCCCAACATTTGTTGCTGTTGTTACTTTCGGTGCTTGTGTTCTTCTAGGCATTCCACTTGAAACAGGAAAGATCTTATCTGCTCTTGCAACATTCAGAATTCTTCAAATGCCGATCTATAATATTCCTGACACAATTTCAGTAATTGCACAAACCAAGGTTTCCCTCGATAGGGTTGTCGCTTTTCTTCGTCTAGATGATTTGCAGACAGATATGGTGGAGAACGTTCCGCGAGGTAGTTCTGATATAGCAATTGAAATAGTTGATGGAAATTTCTCTTGGGATTTATCTTCTGTCGATGCAACTTTGAAAAACATAAATCTTAGACTTTTTCATAATATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTACTTTCTTGTCTAATAGGTGAAATACCAAAGATATCTGGTAACTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGAAAGATAGAAGATAACATACTATTTGGGAGGGAGATGGATAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCATTGAAGAAAGATTTAGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAAAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAGTAGCGCGTGCTCTTTATCAAGATGCCGATATATATCTTCTCGACGATCCCTTTAGTGCAGTTGATGCTCATACAGGATCCCATCTTTTTAAGGAGTGTTTGCTTGGCCTTTTAAAAACAAAAACTGTGATATACATAACACATCAAGTAGATTTCTTACCTGACGCTGATCTGATACTTGTTGTAAAAGAAGGAAGGATAACTCAATCGGGAAAATACAATGACATTCTTACGTCAGGCACCGATTTTATGGAACTTGTAGGTGCACACAGAGCAGCGTTGTCTTCAGTTAAGTCTTTAGAGAGAGGGCCTACACTTAAATCATCGAGTATTACCGGAGAAGACACAAGTTCATTAAGCGATTTTGAACTCGAGCAAGAAGTGGAAAACATAAATGATCGAAACAGCAAGTTAGATGAAACAATTGTGCCGAAAGGCCAACTTGTTCAAGACGAAGAACGTGAAAAGGGTAGTGTTGGGTTTAAAGTGTTCTGGAAATACCTAACAATAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTTCTTTCACACATATTCACCGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCCGAACCTGGTATTGGAAGCTTTGCTCTGATGGTTGTCTATGTTTCTTTGGCAATTGGAATTTCCTTTTCCACCCTTGTTAGAGCATTTCTTGCTGCAATAGTTGGATACAAGACCGCAACCATGCTTTTCAATCAAATGCATTTGAGCTTCATTCGAGCGCCAATGTCATTTTTTGACTCCACCCCAAGTGGAAGAATTCTAAATAGAGCTTCGGCAGACCAAAGTACAGTAGATATGAACATTTCAAATCTAGTGTGGGGATTTACCTACAATATGGTTCAGCTCATGGGAAATATTGCTGTGATGTCTCAAGCGGCATGGCAGGTGTTCATAATATTGGTGCCTGTCGTGGCAGCTTGCATATGGTACCAGCGATACTACTCAGCATCAGCACGTGAATTGGCACGATTAACTGGTATATGCCAAGCGCCAGTTATACAACATTTTTCTGAAACAATATCCGGATCAACAACCATAAGAAGTTTTGATCAAGAATCAAGATTTAGTGAAATGAATATGCAATTGATAGACAAATATTCCCAACCTAAATTATACAGTGCTAGTGCAATGGAATGGTTGAGTTTCAGATTGGATCTTTTATGCTCTACTATGTTTGCTTTCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATAGCTGATCCTAGCATTGCGGGATTGGCTGTGACATATGGGATTAATCTAAATGCTGTACAATTTAAATTAATTTGGAGTCTATGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATACCAAGTGAAGCACCTCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCATTCGGAGAGGTTCATATCCAGGATTTACAGGTTCAATACGCGCCTCACTTGCCTCTTGTTTTACGCGGACTTACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACCTTAGTGCAAGCACTTTTCAGACTTGTTGAACCTGTTGCAGGACAAATATTGATAGATAATATCAACATCTCATTGATTGGAGTCCATGATTTACGGTCCAGACTAAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAACTAACCTCGACCCGCTAGAAGAGTACACAGATGAACAAATTTGGGAGGCTCTTGATATGTGCCAACTTGGAGATGAAATGAGAAAGAAAGAAGGAAAGCTTGACTCCACAGTTACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGACAGTTAGTGTGCCTCGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTCGATGAAGCTACTGCATCAGTCGATATGGCTATGGATAATATAATTCAACAGACAGTTAAGCAACATTTCTCTGATTGCACGGTCATCACCATTGCTCATAGAATAACTTCAATCCTCGATAGCGACATGGTTTTGTTTCTCACTAAAGGGCTTATTGAGGAATATGATTCACCAAAGAAGTTGCTTAAGGACAAATCTTCTTCTCTTGCTCAACTAGTTGCAGAATATACAAGGAGGTCAAACACTGGTTTTGGAAGTTGA 3921 0.3889 MTKRALEESLLNGEASVSNNSSDSKKLGGNEILTSYLNAGFFSILTFSWMTPLITLGSKKTLNHQDLPLLSTNDTAYGSFSTFRKNLELECGNVISTVTTIKLAKVLFLSTWEGILISGIFAFLYVCASYVGPYLIDNLVQYLNDENKVKNEGYVLATAFVVAKLVECLSQRHSMFKYQQVGVRMQSMLVSMIYAKGLTISCQSKEGHSSGEIINLMTVDAQRISEFCLSMHDPWMAVLQISLALFILHRSVGVASVAAFAATIIVMLLNLPMTSLQERLQAKLMEFKDKRMKATSEVLMNMRILKLQAWEMKFLSKIIQLRKLEEMWLKKFLVGTAIVRFLFFSAPTFVAVVTFGACVLLGIPLETGKILSALATFRILQMPIYNIPDTISVIAQTKVSLDRVVAFLRLDDLQTDMVENVPRGSSDIAIEIVDGNFSWDLSSVDATLKNINLRLFHNMRVAVCGTVGSGKSSLLSCLIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEDNILFGREMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQVARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVDFLPDADLILVVKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERGPTLKSSSITGEDTSSLSDFELEQEVENINDRNSKLDETIVPKGQLVQDEEREKGSVGFKVFWKYLTIAYGGALVPFLFLSHIFTVVLQIASNYWMALATPVSATAEPGIGSFALMVVYVSLAIGISFSTLVRAFLAAIVGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASADQSTVDMNISNLVWGFTYNMVQLMGNIAVMSQAAWQVFIILVPVVAACIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFDQESRFSEMNMQLIDKYSQPKLYSASAMEWLSFRLDLLCSTMFAFCLVFLVSFPSSIADPSIAGLAVTYGINLNAVQFKLIWSLCNLENKIISVERILQYTSIPSEAPLVIKDNQPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQALFRLVEPVAGQILIDNINISLIGVHDLRSRLSIIPQDPTMFEGTVRTNLDPLEEYTDEQIWEALDMCQLGDEMRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDMAMDNIIQQTVKQHFSDCTVITIAHRITSILDSDMVLFLTKGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS* 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3948 1306 Gene3D - 409 666 IPR027417 -
Psa5g3948 1306 Gene3D ABC transporter type 1, transmembrane domain 706 1041 IPR036640 GO:0005524|GO:0016021
Psa5g3948 1306 Gene3D ABC transporter type 1, transmembrane domain 96 408 IPR036640 GO:0005524|GO:0016021
Psa5g3948 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1060 1294 IPR003439 GO:0005524
Psa5g3948 1306 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 4 1305 - -
Psa5g3948 1306 SUPERFAMILY ABC transporter transmembrane region 740 1042 IPR036640 GO:0005524|GO:0016021
Psa5g3948 1306 SMART AAA_5 1086 1271 IPR003593 -
Psa5g3948 1306 SMART AAA_5 457 630 IPR003593 -
Psa5g3948 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 743 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3948 1306 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 4 1305 - -
Psa5g3948 1306 CDD ABC_6TM_ABCC_D1 117 404 IPR044746 GO:0140359
Psa5g3948 1306 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 430 653 IPR003439 GO:0005524
Psa5g3948 1306 Pfam ABC transporter transmembrane region 743 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3948 1306 Pfam ABC transporter transmembrane region 116 383 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3948 1306 SUPERFAMILY ABC transporter transmembrane region 114 409 IPR036640 GO:0005524|GO:0016021
Psa5g3948 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 652 IPR027417 -
Psa5g3948 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1285 IPR027417 -
Psa5g3948 1306 CDD ABCC_MRP_domain2 1058 1278 - -
Psa5g3948 1306 Coils Coil 277 297 - -
Psa5g3948 1306 CDD ABCC_MRP_domain1 430 630 - -
Psa5g3948 1306 Pfam ABC transporter 448 582 IPR003439 GO:0005524
Psa5g3948 1306 Pfam ABC transporter 1078 1225 IPR003439 GO:0005524
Psa5g3948 1306 CDD ABC_6TM_ABCC_D2 741 1035 IPR044726 GO:0140359
Psa5g3948 1306 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 116 396 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3948 1306 ProSitePatterns ABC transporters family signature. 555 569 IPR017871 GO:0005524
Psa5g3948 1306 Gene3D - 1043 1296 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3948 Psa-Chr5 310680775 310688193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3948 430 857 Calmodulin-binding Proteins AT2G36910 24.947 1.99e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3948 - K05666 gmx:106794105 2038.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3948 5 310680775 310688193 Psa5g3948 5 310680775 310688193 ECH