Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3947 ATGGAAAGGGATTCTAGTATCTGGCTTATTTGGATTGCACAAACCAAAGTTTCCCTCGATAGGATTGTAACTTTTCTTCGCCTAGATGATTTGCAGACTGATGTAGTGGAGAAGGTTCCGCGAGGTAGTTCTGATATAGCAATTGAAATAGTAAATGGAAATTTCTCTTGGGATTTTTCTTCTGTCAATACAACTTTGAAAAACATAAACCTTAGAGTTTGTCAGGGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTAGTTTCTTGTATAATAGGTGAAATACCAAAGATATCTGGCAACTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAAAGTGGAAAGATAGAAGAGAACATACTGTTTGGGAAAGAGATGGATAGGGAAAGGTATGAGAAGGTGCTAGAAGCATGTTCGTTGAAGAAAGACCTGGAGGTTTTACCATTTGGTGATCAGACTATTATTGGAGAGAAGGGAATTAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCGCGTGCGCTTTACCAAGATGCCGATATATATCTTCTCGATGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTAAAAACAAAAACTGTGATATACATAACACATCAAGTAGGCCAACTTGTTCAAGACGAAGAACGTGAAAAGGGTAGTGTTGGGTTTAAAGTGTTTTGGAAATACATAACAACAGCTTATGGAGGAGCTCTTTACCTTTCCTATTGCTGTCACAAGATACTCACTGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGAAGAACCTGTTATTGGAAACCTTACTCTGATGGTTGTCTATGTTTCTTTGGCTATTGGAAGTTCCTTTGCCACTCTTGGCAGAACAGTTCTGACTGTGATAGCTGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCATTCGAGCGCCAATGTCATTTTTTGATTCAACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGTCGGACCAAAGTACAGTAGATACGAACATTTCAAATCTAGCATGGGGTTTCACCTACGACATGGTTCAGCTATTGGGAACTATTGCTGTGATGTCTCAAGCAGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTTGCATTTGGTTCCAGCGATACTACTCAGCATCAGCACGGAAATTGGCTCGATTAACTGGTATATGTCAAGCTCCAGTTATTCAACACTTTTCTGAAACCATTTATGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCCCAACCTAAATTATACAGTGCTAGTGCAATGGAATGGTTGAATTTCAGATTGGATCTTTTATCCTTTACCATATTTGCCTTCTGCTTGATTTTCTTGGTATCTTTTCCAAGTTCAATTGTTGATCCTAGTATTGCGGGATTGGCTGTGACATATGCGATTAATCTAAATGCTATACAATCTGATTTAATTAGGTTTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACTTCCATCCCAAGTGAAGCACCCCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCATTCGGAGAGGTTCATATCCAGGATTTACAGGTTCAATATGCTCCTCACTTGCCTCTTGTTTTACGTGGACTGAAATGCACTTTCACTGCTGGAGCAAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTTGTCAAGCACTTTTCAGAATTGTTGAACCTGCCGCAGGACAAATATTGA 1926 0.3915 MERDSSIWLIWIAQTKVSLDRIVTFLRLDDLQTDVVEKVPRGSSDIAIEIVNGNFSWDFSSVNTTLKNINLRVCQGMRVAVCGTVGSGKSSLVSCIIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKTKTVIYITHQVGQLVQDEEREKGSVGFKVFWKYITTAYGGALYLSYCCHKILTVVLQIASNYWMALATPVSATEEPVIGNLTLMVVYVSLAIGSSFATLGRTVLTVIAGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASSDQSTVDTNISNLAWGFTYDMVQLLGTIAVMSQAAWQVFIVLIPVMAACIWFQRYYSASARKLARLTGICQAPVIQHFSETIYGSTTIRSFEQESRFNEMNMQLIDKYSQPKLYSASAMEWLNFRLDLLSFTIFAFCLIFLVSFPSSIVDPSIAGLAVTYAINLNAIQSDLIRFLCNLENKIISVERILQYTSIPSEAPLVIKDNQPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLKCTFTAGAKTGIVGRTGSGKSTLVKHFSELLNLPQDKY* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3947 641 CDD ABC_6TM_ABCC_D2 272 558 IPR044726 GO:0140359
Psa5g3947 641 SUPERFAMILY ABC transporter transmembrane region 264 565 IPR036640 GO:0005524|GO:0016021
Psa5g3947 641 Gene3D - 567 640 IPR027417 -
Psa5g3947 641 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 11 232 - -
Psa5g3947 641 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 233 633 - -
Psa5g3947 641 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 285 IPR003439 GO:0005524
Psa5g3947 641 Gene3D ABC transporter type 1, transmembrane domain 247 566 IPR036640 GO:0005524|GO:0016021
Psa5g3947 641 Gene3D - 25 240 IPR027417 -
Psa5g3947 641 CDD ABCC_MRP_domain1 48 232 - -
Psa5g3947 641 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 272 546 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3947 641 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524
Psa5g3947 641 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 11 232 - -
Psa5g3947 641 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 233 633 - -
Psa5g3947 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 236 IPR027417 -
Psa5g3947 641 Pfam ABC transporter transmembrane region 270 509 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3947 641 SMART AAA_5 75 256 IPR003593 -
Psa5g3947 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 635 IPR027417 -
Psa5g3947 641 Pfam ABC transporter 601 635 IPR003439 GO:0005524
Psa5g3947 641 Pfam ABC transporter 66 200 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3947 Psa-Chr5 310663313 310667887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3947 19 232 Calmodulin-binding Proteins AT2G36910 33.043 2.00e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3947 - K05666 mtr:MTR_3g056645 675.241