Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3945 ATGTGTGACACTGTAATTTCATGTGCTCGTGAACACTTGCTTCCACTAGCCCGTGATCATTTGCTTCCATTATTAAAGGAGGCAGTCAACATAATTAGGGGTGTCCCAACAGAAATTGCAGAAATGAAAGATGAACTTGAACGCATTGAAGGCTTCATCAACAAAGCAGATAGAATGGCCGATTCACAAGAAGACAACACAAGTCTCAAAATGAGAGCAACGATCAAGCAGCTGATAGAAGCATCTTTTCACATAGAAGATATCATTGATGAATACTTGATCCGTGAGGAGCAACAACTTCCAGATCCTGGATGTGCTGCTGTTGCCAACTATGGCGCTAACTATGTCAAAACTAAGATTCTCCGTCTCCACATAACCTACAAGATTCAAAACATCAAATCCCGAATTGCTTTAATAAAAGATACATTTGAAAAAGATCATGGCTTCCCAATCCATTCTTCTTGGGAAATAGGATCAAGCAGTTCTACAGAAACTCCAAATGCCACATTATTGCAGAACCTTCGTGAGGCTCCATTTTACATGGAGGAAACTGATGTTGTGGGCTTTGAAGAGCCAAGAGGCATAATGATTGATTGGTTGGTAAAGGGAAGAGCAGAGCGCACAATTGTCTCCCTTGTTGGAATGGGAGGACAGGGTAAAACCACTCTTGCCAAAAGAGTTTTTGACAACACCGAGGTCGTTAATCACTTTGACTGTCATGCCTGGATCACAGTGTCTCCATCATACAATATAGAAAATTTGTTGAAGGACATTTTGTGCCAGTTTTATAAACGACAGGGAGTCGATCCTCCTCAAGGTATTCATCAAATGGATCGAAAGTCATTAGTTGATGAAGTGAGAAACTACTTGCTGAGAAAAAGGTATGTTGTTGTGTTTGATGATGTATGGAACATTAATTTTTGGGGTGATATTGAATTTGCAATGATTGATAAAAAAAATGGTTCTAAGGTATTAATCACAACAAGGAAAATGAATGTTGCAAATGCTTGTAAGAGATCTTCTTTTGTTGAAGTGCTTGAGCTGAAAAGTTTAAATGATGACCAATCTTTAGAGTTGTTCAATAAGAAGGCATTTCATGATTTGAACGGATATTGTCCTGAAAATCTTAAGGACATATCTTCCAAAATTATTGAAAAATGCAAAGGACTGCCACTAGCGATTGTAGTCATAGGTGGTCTTTTGTCTCAGAAGGATAGAAAAAAATTTGAATGGGATAGGTTTATTGAACACTTGAATTCAGAGTTAAATAGAGATTTTAGGATAAATCGGATTTTAGCTCTAAGTTACCATGATTTGTCTTACAATCTTAAGCCATGTTTGTTATATTTTGGTATGTATCCCGAAGACTACAAAGTTAACGCAAAAATGCTGATTAGACAATGGATTGCTGAAGGATTTGTAAAAGACGATAAGGTGCACACTTTAGAAGAAGTTGCAGAAGGATATTTAATAGAGTTGATACTTAGAAGTTTGGTGCAGGTAGTTTCGATGAGTATTGATGGAAGAGCAGAAAGTTGTCGTGTTCATGATCTTGTGCATGCAATGATCCTTGAAAAATGTGAGGATTTAAGTTTTTGTAAGAATATTAGTGACGATGATCAGTCATCTTCATCTGCAATAGTTCGACGCCTATCAATAGCATCCGATTCTGATAATTTGGTGGAAAGTATTGAAAGCTCAAAAGTTCATTCACTGTTTGTTTTCACATCCAAAACATTACCCCAATCCCTTGTAAAAACAATCCCTTCAAAGTACAGGCAGTTGAAGGTGCTTGCTATTGAGCATGTTGGATTTCTCCAAGTTCCAAAAGATTTGGAAAGTTTGATCCACTTGAAGTTTATCAGTTTCATTGACCATCCTCCATTTGAATTTGAATCTTCAAAATCCATATTTGGCATGCTGGAGAACCTAGAAACCTTATGTTTAGGGCAAGTAAGAAAATATACTATGCCAAAGGAGATTTGCAAGCTTACAAAGCTGCGTCATTTTCTAGGCAAAAAAATGTCTTTGATTGGATTGAAGGATGGTATCGGAGATATGACATCCCTACAAACTCTAACAAATGTTTATTTAGATGAAGACGAAGACGAAGATGATAATAGAGTAGTAGAGTTAATCCATGAGCTGGGAAAGTTGAAGCAACTAAAGGAATTGAGTGTGTCTGGTGTTAGGAGTAAATATATGAGTGCTCTGTCTTCTTCGATCAACGAGATGCAACAATTAGAGGAACTAGCTATTCAAGGAAAACAAACGAGCACGATCATTATTGATCTGCATTTGAAATCACCCCCACCCTTGCTTCGATCTCTTAAACTCAACGGAAAGTTATGGAAGTTGCCAGAATGGATCCCAAAGCTTCAAAATCTTGTTATGCTGCATCTCTATGAGTCAGAGCTAATGGACGATGCAATTAACTTATTCAAAACACTTGAATAA 2457 0.3732 MCDTVISCAREHLLPLARDHLLPLLKEAVNIIRGVPTEIAEMKDELERIEGFINKADRMADSQEDNTSLKMRATIKQLIEASFHIEDIIDEYLIREEQQLPDPGCAAVANYGANYVKTKILRLHITYKIQNIKSRIALIKDTFEKDHGFPIHSSWEIGSSSSTETPNATLLQNLREAPFYMEETDVVGFEEPRGIMIDWLVKGRAERTIVSLVGMGGQGKTTLAKRVFDNTEVVNHFDCHAWITVSPSYNIENLLKDILCQFYKRQGVDPPQGIHQMDRKSLVDEVRNYLLRKRYVVVFDDVWNINFWGDIEFAMIDKKNGSKVLITTRKMNVANACKRSSFVEVLELKSLNDDQSLELFNKKAFHDLNGYCPENLKDISSKIIEKCKGLPLAIVVIGGLLSQKDRKKFEWDRFIEHLNSELNRDFRINRILALSYHDLSYNLKPCLLYFGMYPEDYKVNAKMLIRQWIAEGFVKDDKVHTLEEVAEGYLIELILRSLVQVVSMSIDGRAESCRVHDLVHAMILEKCEDLSFCKNISDDDQSSSSAIVRRLSIASDSDNLVESIESSKVHSLFVFTSKTLPQSLVKTIPSKYRQLKVLAIEHVGFLQVPKDLESLIHLKFISFIDHPPFEFESSKSIFGMLENLETLCLGQVRKYTMPKEICKLTKLRHFLGKKMSLIGLKDGIGDMTSLQTLTNVYLDEDEDEDDNRVVELIHELGKLKQLKELSVSGVRSKYMSALSSSINEMQQLEELAIQGKQTSTIIIDLHLKSPPPLLRSLKLNGKLWKLPEWIPKLQNLVMLHLYESELMDDAINLFKTLE* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3945 818 PANTHER - 40 814 - -
Psa5g3945 818 SUPERFAMILY L domain-like 514 811 - -
Psa5g3945 818 Pfam Rx N-terminal domain 20 99 IPR041118 -
Psa5g3945 818 Gene3D - 436 527 IPR036388 -
Psa5g3945 818 PRINTS Disease resistance protein signature 209 224 - -
Psa5g3945 818 PRINTS Disease resistance protein signature 289 303 - -
Psa5g3945 818 PRINTS Disease resistance protein signature 387 401 - -
Psa5g3945 818 PRINTS Disease resistance protein signature 717 733 - -
Psa5g3945 818 CDD RX-CC_like 19 141 IPR038005 -
Psa5g3945 818 Gene3D - 177 345 IPR027417 -
Psa5g3945 818 Pfam NB-ARC domain 196 424 IPR002182 GO:0043531
Psa5g3945 818 Gene3D Ribonuclease Inhibitor 552 818 IPR032675 -
Psa5g3945 818 Gene3D - 16 144 - -
Psa5g3945 818 PANTHER DISEASE RESISTANCE PROTEIN RP 40 814 IPR044974 GO:0006952
Psa5g3945 818 Gene3D - 350 435 IPR042197 -
Psa5g3945 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 450 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3945 Psa-Chr5 310526831 310529978 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3945 210 406 WRKY Transcription Factor Family AT5G45050 30.244 1.25e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3945 K13457 - gmx:100819372 729.554