Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3934 ATGGCGGTTTCTTCTCTCTCTACAACGTTCGTTCCTTCTCTTTCTCTCTCTTCCAAACCGAAGCTCCAATCTCTATGCTTTCTCTCCGGTAACACTTTGAGGTTTACGAATTCAAAGCCTCTTCATTCATCAACTGTGGTTCATGCTGCTCCGGAAGTGTTGGTTTCCGCTGAAACCAAAGATGTTGAGTCTGTTGACGCTGGCGTTCAGGGTGATGAGTTGGAGACTCCAAGCACTTCGGCAATTAGCATTGGAGCTGACGCCGACATGATGGCACCAAAGCAAAAAATCAGAATCAAGCTTAGATCTTACTATGTGCCCTTGATAGAGGATTCTTGCAAGCAGATATTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAGGCGAGTTTTTTGTCTTCTTAAATCTTCACACGTACACAAAGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGCATCATTGATATTCTCTATCCTACTGCTCAAACAATAGATTCTCTTATGCTACTTGATCTTCCTGATGGTGTTGATGTTGAGGTTAAGCTTTAG 582 0.4347 MAVSSLSTTFVPSLSLSSKPKLQSLCFLSGNTLRFTNSKPLHSSTVVHAAPEVLVSAETKDVESVDAGVQGDELETPSTSAISIGADADMMAPKQKIRIKLRSYYVPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVFCLLKSSHVHKDARFHFEIRTHQRIIDILYPTAQTIDSLMLLDLPDGVDVEVKL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3934 193 Pfam Ribosomal protein S10p/S20e 98 192 IPR027486 -
Psa5g3934 193 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 193 IPR001848 GO:0003735|GO:0005840|GO:0006412
Psa5g3934 193 TIGRFAM rpsJ_bact: ribosomal protein uS10 95 192 IPR001848 GO:0003735|GO:0005840|GO:0006412
Psa5g3934 193 Gene3D Ribosomal protein S10 domain 85 193 IPR036838 -
Psa5g3934 193 SMART Ribosomal_S10_2 98 192 IPR027486 -
Psa5g3934 193 SUPERFAMILY Ribosomal protein S10 96 193 IPR036838 -
Psa5g3934 193 PRINTS Ribosomal protein S10 family signature 96 109 IPR001848 GO:0003735|GO:0005840|GO:0006412
Psa5g3934 193 PRINTS Ribosomal protein S10 family signature 131 146 IPR001848 GO:0003735|GO:0005840|GO:0006412
Psa5g3934 193 PRINTS Ribosomal protein S10 family signature 152 166 IPR001848 GO:0003735|GO:0005840|GO:0006412
Psa5g3934 193 PANTHER BNAC05G40270D PROTEIN 1 193 - -
Psa5g3934 193 Hamap 30S ribosomal protein S10 [rpsJ]. 94 193 IPR001848 GO:0003735|GO:0005840|GO:0006412
Psa5g3934 193 ProSitePatterns Ribosomal protein S10 signature. 120 135 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3934 95 193 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 29.524 1.45e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3934 K02946 - gmx:100306286 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3934 5 310099906 310102556 Psa5g3934 5 310099906 310102556 ECH