Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3927 ATGACTAAACATGCTCTTCAAGAGTCCCTTTTGAACGGTGTAAGCAACAACAGTTCTGAAGAAAATGAAATTTTAACAAGTTATTCAAAGGCTGGGTTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCGCTAATAACATTAGGGAGTAAAAAGACTTTAAACCATCAAGACCTTCCACTTCTTTCTGCCAATGACACTGCCTGTGGATCTTTTTCAACTTTTACAAAAAACCTTGAGCTGGAGTGTGGTAATGTTACGATGGTGACCCCTATTAAGCTTGTCAAGGTGCTGTTCTTATCGACATGGAAAGGGATTCTAATGTCTGGCTTATTTGCATTCTTGTACGTATGTGCTACTTATGTAGGACCCTACCTTATTGAAAACCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAAAATGAAGGCTATGTTTTGGCTACGGCGTTTATTGCGGCAAAGCTTGTTGAGTGTCTTTCGCAAAGGCACTGGATGTTTAAGTTCCAACAGGTTGGCGAGTTTTGTTGGTATATGCATGATATATGGATGTCTGTTCTACAAATTTCTTTGGCTTTGTTTATTCTTCAAAGAAGTGTCGGGGTTGCTTCAGTAGCTGCTTTTGCTGCAACTGTTGTTGTGATGTTGCTAAACCTTCCTGTGACTTCACTGCAAGAGAGGTCCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCGACGACTGAGATTCTAATGAACATGAGGATTCTTAAACTGCAAGCCTGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGTTAGAGGAGACATGGCTAAAAAAATTTCTTATTGGAATTCCACTTGAATCAGGAAAGATCTTATCCGCTCTTGCAACATTCCGGATTCTTCAAATGCCTATCTATGGTCTTCCTGACACAATTTCAATGATTGCACAAACCAAAGTTTCCCTTGATAGGATTGTAACTTTTCTTCGTCTAGATGATTTGCAGACTGATGTAGTGGAGAAGCTTCCACGAGGTAGTTCTGATATAGCAATTGAAATAGTAAATGGAAATTTCTCTTGGGATTTATCTTCTGGCAATACAACTTTGAAAAACATAAACCTTAGAGTTTGTCATGGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTAGTTTCTTGTATAATAGGTGAAATACCAAAGATATCTGGTAACTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAGAGTGGAAAGATAGAAGAGAACATACTGTTTGGGAAAGAGATGGATAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCGTTGAAGAAAGACCTAGAGGTTTTACCATTTGGTGATCAGACTATTATTGGAGAGAAGGGAATTAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCGCGTGCGCTTTACCAAGATGCCGATATATATCTTCTCGATGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTAAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGACGCTGATCTGATACTTGTCATGAAAGAAGGAAGGATAACTCAATCGGGAAAGTACAATGACATTCTTACGTCAGGAACTGATTTTATGGAACTTGTAGGAGCACACAGAGCAGCGTTGTCTTCAGTTAAGTCCTTAGAGAGAAGGCCTACATTTAAAATATCGAGTATAACCGGAGAAGACACAGGTTCATTAAGTGATTTTGAACTTGAGCAAGAAATAGAAAATGTAGATGATCGAAACGGCAAGTTAGATGAAACAATTGTGCCGAAAGGCCAACTTGTTCAAGACGAAGAACGTGAAAAGGGTAGTGTTGGGTTTAAAGTGTTTTGGAAATACATAACAACAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTGCTGTCACAGATACTCACTGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGAAGAACCTGTTATTGGAAACCTTACTCTGATGTTCCTTTGTGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGAAGAACCTGTTATTGGAAACCTTACTCTGATGGTTGTCTATGTTTCTTTGGCTATTGGAAGTTCCTTTGGCACCCTTGGCAGAGCAGTTCTTGCCGCAATAGCTGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCATTCGAGCGCCGATGTCATTTTTTGATTCAACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGTCAGACCAAAGTACAGTAGATATGAACATTTCAAATCTAGCCTGGGGTTTCACCTACAATATGGTTCAGCTATTGGGAAGTATAGCTGTGATGTCTCAAGCGGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTTGCATTTGGTACCAGCGATACTACTCAGCATCAGCACGAGAATTAGCACGATTAACTGGTGTATGCCAAGCGCCAGTTATACAACATTTTTCTGAAACGATATCCGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTACTGAATTGAATATACAATTGATAGACAAATATTCCCAACCTAAATTATACAGTGCTAGTGCAATGGAATGGTTGAATTTCAGATTGGATCTTTTATCCTCTACTATGTTTGCTTTCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATTGCTGATCCTAGTATTGCGGGATTGGCTGTGACATATGGGATTAATCTAAATGCTATACAAACTAATTTAATTTGGTTTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCATCTCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCATTCGGAGAGGTTCATATCCAGGATTTACAGGTTCAGTATGCTCCTCACTTGCCTCTTGTTTTACGTGGACTAAAATGCACTTTCACCGCTGGAGCAAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTTGTGCAAGCACTTTTCAGACTTGTTGAACCTGTCGCGGGACAAATATTGATAGATAACATCAACATCTCATTGATTGGAATTCATGATTTAAGGTCCAGACTAAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACAGTAAGAAGCAACCTCGACCCACTGGAAGAATACACAGATGAACAAATTTGGGAGGCTTTAGATATGTGCCAACTAGGAGATGAAGTGAGGAAGAAAGAAGAAAAGCTCGACTCAACAGTTACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGACAGTTGACAGTTAAGCAACATTTCTCTGATTGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTTGATAGCGACATGGTTCTGTTTCTCAGTGAAGGTCTTATAGAGGAATATGATTCACCAAAGAAGTTGCTTAAGGACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGATCAAACACTGGTTTTGGAACTTGA 3684 0.392 MTKHALQESLLNGVSNNSSEENEILTSYSKAGFFSILTFSWMSPLITLGSKKTLNHQDLPLLSANDTACGSFSTFTKNLELECGNVTMVTPIKLVKVLFLSTWKGILMSGLFAFLYVCATYVGPYLIENLVQYLNDENKVKNEGYVLATAFIAAKLVECLSQRHWMFKFQQVGEFCWYMHDIWMSVLQISLALFILQRSVGVASVAAFAATVVVMLLNLPVTSLQERSQAKLMEFKDKRMKATTEILMNMRILKLQAWEMKFLSKIIQLRKLEETWLKKFLIGIPLESGKILSALATFRILQMPIYGLPDTISMIAQTKVSLDRIVTFLRLDDLQTDVVEKLPRGSSDIAIEIVNGNFSWDLSSGNTTLKNINLRVCHGMRVAVCGTVGSGKSSLVSCIIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRPTFKISSITGEDTGSLSDFELEQEIENVDDRNGKLDETIVPKGQLVQDEEREKGSVGFKVFWKYITTAYGGALVPFLLLSQILTVVLQIASNYWMALATPVSATEEPVIGNLTLMFLCVLQIASNYWMALATPVSATEEPVIGNLTLMVVYVSLAIGSSFGTLGRAVLAAIAGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASSDQSTVDMNISNLAWGFTYNMVQLLGSIAVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLTGVCQAPVIQHFSETISGSTTIRSFEQESRFTELNIQLIDKYSQPKLYSASAMEWLNFRLDLLSSTMFAFCLVFLVSFPSSIADPSIAGLAVTYGINLNAIQTNLIWFLCNLENKIISVERILQYTSIPSEASLVIKDNQPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLKCTFTAGAKTGIVGRTGSGKSTLVQALFRLVEPVAGQILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSTVTENGENWSMGQRQLTVKQHFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGT* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3927 1227 Gene3D - 333 590 IPR027417 -
Psa5g3927 1227 Gene3D - 1159 1223 IPR027417 -
Psa5g3927 1227 Pfam ABC transporter 369 503 IPR003439 GO:0005524
Psa5g3927 1227 Pfam ABC transporter 1032 1158 IPR003439 GO:0005524
Psa5g3927 1227 SUPERFAMILY ABC transporter transmembrane region 699 994 IPR036640 GO:0005524|GO:0016021
Psa5g3927 1227 Gene3D ABC transporter type 1, transmembrane domain 87 332 IPR036640 GO:0005524|GO:0016021
Psa5g3927 1227 SUPERFAMILY ABC transporter transmembrane region 101 329 IPR036640 GO:0005524|GO:0016021
Psa5g3927 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 170 282 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3927 1227 Gene3D ABC transporter type 1, transmembrane domain 627 995 IPR036640 GO:0005524|GO:0016021
Psa5g3927 1227 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 709 1159 - -
Psa5g3927 1227 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 172 283 - -
Psa5g3927 1227 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1157 1227 - -
Psa5g3927 1227 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 173 - -
Psa5g3927 1227 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 281 707 - -
Psa5g3927 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3927 1227 CDD ABCC_MRP_domain2 1012 1199 - -
Psa5g3927 1227 SMART AAA_5 378 551 IPR003593 -
Psa5g3927 1227 SMART AAA_5 1040 1199 IPR003593 -
Psa5g3927 1227 CDD ABCC_MRP_domain1 351 551 - -
Psa5g3927 1227 Gene3D - 997 1158 IPR027417 -
Psa5g3927 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1215 IPR003439 GO:0005524
Psa5g3927 1227 CDD ABC_6TM_ABCC_D2 700 989 IPR044726 GO:0140359
Psa5g3927 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 573 IPR027417 -
Psa5g3927 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1206 IPR027417 -
Psa5g3927 1227 ProSitePatterns ABC transporters family signature. 476 490 IPR017871 GO:0005524
Psa5g3927 1227 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 709 1159 - -
Psa5g3927 1227 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 173 - -
Psa5g3927 1227 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 281 707 - -
Psa5g3927 1227 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1157 1227 - -
Psa5g3927 1227 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 172 283 - -
Psa5g3927 1227 Pfam ABC transporter transmembrane region 171 271 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3927 1227 Pfam ABC transporter transmembrane region 700 940 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa5g3927 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 351 574 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3927 Psa-Chr5 309596478 309603305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3927 351 597 Calmodulin-binding Proteins AT2G36910 29.588 1.69e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3927 - K05666 gmx:106794105 1795.79