Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3905 ATGGCGGACTCCGACAACGATTCCGGTGGTCCGCACGGCGGCGGATCTAGCGCTCACGGCAGCGAGATGTCACCGAGAGAGCAAGACAGGTTCCTTCCGATAGCGAACGTAAGTAGGATCATGAAGAAGGCACTTCCAGCGAACGCGAAGATCTCAAAGGACGCAAAAGAAACAGTTCAAGAGTGCGTTTCAGAGTTCATCAGCTTCATCACCGGCGAAGCTTCCGACAAGTGCCAACGCGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTATGGGCGATGACGACGCTCGGCTTCGAGGAATACGTGGAGCCTCTCAAAGGTTACCTCCAGAGGTTTAGAGAGATGGAAGGAGAGAAGACAGTGGTGGCGCGTGACAAAGACGCGTCTCAGCCTTCTAATAGTGTTAACAACAGTTCCTTTGAGAGTGGTAATTATGGTGCTGGGATGATGATGCATCAAGGACACGTGTATGGTTCAGGTGGATTTCATCAAGGTATGGGTAAGGGTGGGCCTGGATATCCCGGGCCTGGGCCTGGATCTAATTCTGGTAGGCCCAGATAA 567 0.5291 MADSDNDSGGPHGGGSSAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVVARDKDASQPSNSVNNSSFESGNYGAGMMMHQGHVYGSGGFHQGMGKGGPGYPGPGPGSNSGRPR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3905 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Psa5g3905 188 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Psa5g3905 188 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Psa5g3905 188 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Psa5g3905 188 MobiDBLite consensus disorder prediction 162 188 - -
Psa5g3905 188 Gene3D Histone, subunit A 18 145 IPR009072 GO:0046982
Psa5g3905 188 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 157 - -
Psa5g3905 188 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa5g3905 188 MobiDBLite consensus disorder prediction 1 29 - -
Psa5g3905 188 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Psa5g3905 188 SUPERFAMILY Histone-fold 28 134 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3905 Psa-Chr5 308317522 308319447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3905 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.988 3.35e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa5g3905 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3905 K08065 - gmx:100813580 264.618