Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3894 ATGGAGCATGAATATCCTCTCGTTCACAATGGTCAAAATCCAATATCAAGTTCTGATACAGATGCAAAAATACCTACAACAATGAATCCCATAAAGGATGACATTGTGCCACAATTGACTATGCAAGAGAAAAGTTCCTTGCCATTAAAAAATGTGGCAAAAATCATGAGAAAAGGTTTACCACCACACATAAAAATCTCTGATGGAGCAAAAGAGATGGCTGAACAAAGTGCCTCAAAGTTCATTAGCATGGTAACCAAAAAAGCCACTGAACGTTGCATAAAGGAGTCAAGAAAAATTTTAGGTGCTGAAGATTTATTATGGGCCATGATGAGTTTAGGTTACCATAACTATTTTAAGGGTTTGAGCTTTTATCTCCAACGCTATCGTTATAGTAATGGAATTAGGCCTATGCAGGTGGTTTGTGAGATTCCTAAGCACACCTTACCATCACCACCTGTTGCTCTTGAGATAGATGAGGCAATAAACATTGATGAGTTTTGGGATGAACTGAGTGATTTGGGTGATGGTTCAGCAAACTCTGATCCTTCTACTTTGTCCAATATTGGTGGCATGTGTGATGAAAGCATTGATAAAATGAAGGACTAG 609 0.381 MEHEYPLVHNGQNPISSSDTDAKIPTTMNPIKDDIVPQLTMQEKSSLPLKNVAKIMRKGLPPHIKISDGAKEMAEQSASKFISMVTKKATERCIKESRKILGAEDLLWAMMSLGYHNYFKGLSFYLQRYRYSNGIRPMQVVCEIPKHTLPSPPVALEIDEAINIDEFWDELSDLGDGSANSDPSTLSNIGGMCDESIDKMKD* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3894 202 SUPERFAMILY Histone-fold 45 132 IPR009072 GO:0046982
Psa5g3894 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 25 138 - -
Psa5g3894 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Psa5g3894 202 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Psa5g3894 202 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Psa5g3894 202 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Psa5g3894 202 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g3894 202 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa5g3894 202 Gene3D Histone, subunit A 39 139 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3894 37 130 CCAAT-HAP3 Transcription Factor Family AT1G21970 47.872 1.06e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa5g3894 CBFD_NFYB_HMF 4.8e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3894 K08065 - dcr:108206142 107.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3894 5 307209343 307210601 Psa2g0175 2 6745168 6746626 PCT