Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3890 ATGAAGTATTTACAGAAAAAAGTATTCGGTTATGGGGAAAAAATCAATATACTTTTGATGTCGAATCAGGATCAACTAGGACAGAAATCAAACATTGGATGGAACTCTTCTTTGGTGTCAGGAAAATCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCGTTAGGCATGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCTAAAGAGGGTAAATCAGCAACATTAAAATTACCTTTTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCAGACAAGTATGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCTGGAGCTAAACGTTGGTGA 444 0.3941 MKYLQKKVFGYGEKINILLMSNQDQLGQKSNIGWNSSLVSGKSYALEEACTVWEGVLIDQKEESTSTDMPLGMAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPFGEVRLISKNCSATVRQVWNVGVNQKSLGRAGAKRW* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3890 147 PANTHER RIBOSOMAL PROTEIN L2 57 147 IPR002171 GO:0003735|GO:0005840|GO:0006412
Psa5g3890 147 Gene3D - 54 129 IPR014722 -
Psa5g3890 147 SMART Ribosomal_L2_C_2 38 147 IPR022669 GO:0003735|GO:0005840|GO:0006412
Psa5g3890 147 Pfam Ribosomal Proteins L2, C-terminal domain 68 147 IPR022669 GO:0003735|GO:0005840|GO:0006412
Psa5g3890 147 PANTHER - 57 147 - -
Psa5g3890 147 SUPERFAMILY Translation proteins SH3-like domain 68 147 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3890 Psa-Chr5 306869560 306871502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3890 69 143 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 38.961 6.27e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3890 K02886 - csin:114298497 197.593