Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3875 ATGGGAACTTACATTGAAAATCATGTAGAAGACAATGAACACATTTTCCGTAGCCAATATTCGCCCGTTCCGGTACCTGAAAACGTGACATTACCCGAATTCGTGCTCCAAAATACTGAATTTTATGGTGATAAGGTTGCATTTGTGGATGCTGAGAGTGGAAAGGAGGTGACTTATAATGAGGTTGCTAGAGACATATATAGATTTTCAAAGGCTTTAAGGTCTCTTGGTTTGAGAAAAGGGAATGTTGTGATTGTTGTTCTTCCAAATGTTGTTGAGTATGCTATTGTTGCTTTGGGGATTATGGCTTCTGGTGGTGTGTTCTCTGGTGCAAATCCAACTTCACATACTTCAGAAATTAAGAAACAAGTTGAGTCTGCTGATGCAAAGTTGATTGTCACAAATAGTGCAACCTTTGAAAAGGTGAAAAGTCTAGGGCTACCTGTCATTGTCTTAGACGACGAACTTGTTGAAGATGCAATGAACTGGAAGAACCTTCTTGAGGCAGCAGACAGGGCAGGTGATGATCAAATGAAAGAACCGATTCACCAAAACGATCTATGCGCCATGCCATTCTCGTCTGGCACTACCGGAATGTCGAAGGGAGTGATGCTCACACACAGAAACCTTGTAGCAAATCTTTGCTCTACACTTTTTGCTGTAGTGCCAGAAATGATCGGTAAAGTTACCACATTAGGGTTGATTCCATTTTTTCATATTTATGGCATCACCGGAATTTGTTGTGCAACTATAAGGAACAAAGGAAAAGTTGTGGTGATGGGAAGATTTGATTTGAAGTCATTTTTGAATGCTTTGATTAAGCATGAGGTTACATTTGCACCTATTGTTCCACCTATAATTCTTGGATTGGTTAAAAATCCTATTGTGGATGAATTTGATCTTAGTAAGCTTAAGCTTCAAGCTGTGATGACTGCTGCAGCACCACTTGCACCGGAATTGCTTACTTCCTTCGAACACAAGTTTCCTGGTGTCCTTGTTCAAGAGGCATATGGACTAACTGAGCATAGTTGCATTACACTTACATTTGCACAAAAGAAAAGTGGAAATACAAATAAAAATTCAGTTGGTTTCATTCTTCCAAATTTGGAAGTCAAATTCATTGATCCTGAGACAGGTAAGTCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAGCAAGATGATGAGACTGCTCAGACTATTGACAAGAATGGATGGCTTCACACCGGTGACGTTGGATTCATAGACGATGAAGAAAATGTTTTTATCGTTGATCGTATCAAAGAGTTGATTAAATATAAAGGCTTCCAAGTTGCTCCTGCGGAACTAGAGGCTATTTTGCTGTCTCATTCATCGGTCGAAGACGCAGCGGTCGTACCATTGCCGGATGAAGAGGCGGGTGAAATTCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGAGTGAAGAGGACATTATGAAATTTGTGGCTTCTAATGCTGCTCATTACAAGAAAGTGAGAGTGGTGCACTTTGTGGAAGCTATACCAAAGTCACCTTCTGGTAAAATAATGAGGAGGCTTGTCAGAGAGAAGATGGTGGAAAAGATTAAGAAAAATAATAACTTAACAAAATCCAACACTGATTGA 1665 0.4018 MGTYIENHVEDNEHIFRSQYSPVPVPENVTLPEFVLQNTEFYGDKVAFVDAESGKEVTYNEVARDIYRFSKALRSLGLRKGNVVIVVLPNVVEYAIVALGIMASGGVFSGANPTSHTSEIKKQVESADAKLIVTNSATFEKVKSLGLPVIVLDDELVEDAMNWKNLLEAADRAGDDQMKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFAVVPEMIGKVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGRFDLKSFLNALIKHEVTFAPIVPPIILGLVKNPIVDEFDLSKLKLQAVMTAAAPLAPELLTSFEHKFPGVLVQEAYGLTEHSCITLTFAQKKSGNTNKNSVGFILPNLEVKFIDPETGKSLPRNTPGELCVRSQCVMQGYYKQDDETAQTIDKNGWLHTGDVGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKESEEDIMKFVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVREKMVEKIKKNNNLTKSNTD* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3875 554 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Psa5g3875 554 SUPERFAMILY Acetyl-CoA synthetase-like 14 542 - -
Psa5g3875 554 Pfam AMP-binding enzyme 41 444 IPR000873 -
Psa5g3875 554 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Psa5g3875 554 Gene3D - 440 544 IPR045851 -
Psa5g3875 554 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 541 - -
Psa5g3875 554 Gene3D - 13 439 IPR042099 -
Psa5g3875 554 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 8 541 - -
Psa5g3875 554 CDD 4CL 25 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3875 Psa-Chr5 306538902 306541946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3875 10 544 Monolignol Biosynthesis Gene Families AT1G62940 72.812 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3875 K01904 - gmx:100814237 929.087