Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3864 ATGGTTTCATTTTCTTCAAATTATGCAATAGGAGAAAACAGCATGGCTAGTAGTAGTAGTAGTGGTACTAGTAGCTTCCAAAACACGCCTCCTCAATCTCAACCTTGTTTTATGACTAGAATGGCCATGAGAATATCAAGATCAAGATGGTTCATTTTTTTGAGAAGAGTGTTTCATTACCAAAATGGACCAAGATCTGATCTTGGTTCTAACCCTTTTAATTCTAGGACTTGGATGATGTTGGAGTTGGTTGCTTTGTTGGTTCAAATTACAAGCACAACATTTACTTTGGTGGTTTCAAAGAGTGAGAAACCGGTTAGGCCTATGAGGGTTTGGGTTGTTGGTTATGACATTGGGTGTGTTCTTAATTTGTTGTTGCTTTGTGTTCGGTATTATCAAATTGGTTTGAATCATGGTGCTGGTGATGATGCTCTTGGTCTTTCTCATGATGTGGAACAACAAATAAACAATGAAGAAAACAGTGTGTATAGGAGCACACATTTGATGAGCAAATGCAAAAGTTCACTAGAGCTCTTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAATCCTATGCATTATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTTCCCTTTTCTTCTCTTTTTGTTGCTTTGTTGTTGTGTTCCACTCATTACCACCCTCCTTGGTTATGACATGAACATGGGAGCCTCTTCTAGAGGTGCTTCTGATGATCAAATCTCACATCTTCCATCTTGGAGATTTAAAGTTGATCATACCAAATTGGATCTTGACAATGATTCTCAATGCAGTGAAAGATTGATCCGCGATGAGCCGGAATGTTGCATATGTTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTGCCTTGTTCACATATGTTCCATCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAAGAATTACAAAGGTAG 1020 0.3784 MVSFSSNYAIGENSMASSSSSGTSSFQNTPPQSQPCFMTRMAMRISRSRWFIFLRRVFHYQNGPRSDLGSNPFNSRTWMMLELVALLVQITSTTFTLVVSKSEKPVRPMRVWVVGYDIGCVLNLLLLCVRYYQIGLNHGAGDDALGLSHDVEQQINNEENSVYRSTHLMSKCKSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQILCIILLVWNAICYSFPFLLFLLLCCCVPLITTLLGYDMNMGASSRGASDDQISHLPSWRFKVDHTKLDLDNDSQCSERLIRDEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQELQR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3864 339 CDD RING-H2_RNF111_like 291 334 - -
Psa5g3864 339 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 338 - -
Psa5g3864 339 Pfam RING-like zinc finger 292 320 IPR001841 -
Psa5g3864 339 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 338 - -
Psa5g3864 339 SUPERFAMILY RING/U-box 284 337 - -
Psa5g3864 339 SMART ring_2 293 333 IPR001841 -
Psa5g3864 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 338 IPR013083 -
Psa5g3864 339 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3864 Psa-Chr5 305556493 305559808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3864 37 337 C3H Transcription Factor Family AT4G26580 64.120 2.44e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3864 - - gmx:100818715 521.161