Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3846 ATGTCTCAATCATCATCACCATCATCCATGTCTCAAACCACCACCCTCATCACGCTCCTCTTCTTCTTCCTCTTCCCAACCACACTCTCCCAAAACACAACCTTCAACTTCCCTTCTTTCACACTCCGCAACATAACCCTCCTCGGCGACTCCTTCCTCCACGACGGCGTTGTTGGACTCACTCGCTCCACCACCGTCCCGGCTTCCACCTCCGGCACCCTCCTTTACAACAACCCCATTTCTCATATACCCAATTCCTCTTTCTCTTTCTCCACCAACTTCACTTTCTCCATCACTAACTCAAACCCAAACCCTCCTTCTTCCTCACCCAACCACTTCTCGTTCTTCCTCAATTCCACCACCCCTTTCATCTCCCTCGATTTTCACACAAACAACAACCAAATTAGTTTATATTTCAACACTTCAGTCCAAAAAACCATTGATTTCAATCTCACGAGTGAAAACTTGATCACTTCTTGGATTGACTATAATGGTTTCAACACAAACTTCACTGTTTTCTTGAGCTATGCAAATTCAACTTTTTCGAAACCTGAAAAACCTGTTTTGAGTGTTGGTTTTGATCTTTCTGAGTATTTCAAGGATGTTGAGTTTCTCTATGTTGGGTTTTTGGGTTCTGCTTTAGGAAGTACAGAGCTTCAACAAATCATGAATTGGAGCTTTGAATCTTCTCAGTTTTTAGATATTAATCAAACTCAAGATAAAAATTCAAGCTTTCACCATGTGGGCTATGAAAATGAGGATATACCTGCTTCAAATTCGACAAAAAAAAGTCATGGAAAGAGATTTGTGATTGGTTTATGTGTTGCTATTGTGGGTCCATCTTTTTTCTTTCTGCTGTTATTTGTTTTAGGCTTTTTTTCTTATAGGAAATGGAGTAGTTTAAGGAAGGTTAACAAGAGTAAAAACTCTATGGGGTGTCCTACAGAGTTTGGTTACAAGGAATTGAAGTTTGCTACAAAAGGGTTTCATGGTTCAAGGATAATAGGGAATGGTTCATTTGGGACTGTTTATAAGGCTTTGTTTGTTTCTTCTGGAACAGTTGCTGCTGTTAAAAGATCAAGACATTCACATGAAGGGAAAACCGAGTTTTTATCCGAGTTATCGATTATAGCTGGTTTACGACACAAGAATTTGGTTCAACTTTTAGGTTGGTGTGTTGAGAAAAATGAGTTGTTGCTTGTTTATGAGTTTATGGTGAATGGAAGTTTAGATAAGTTGCTTTATAGAGAAGCTATTGAGTGTGGTGTTTTGTTGAGTTGGGTTCAAAGGTTTAACATTGTTGTTGGTTTGGCTTCTGTTTTAGCTTATTTGCATCAAGAGTGGAAGATTATCGAAGCGGTTGATAAAAGATTGAACGGCGAGTTCGATGAGGTTGAAATGGAGAAGATGTTGTTGTTAGGTTTGAGTTGTGCAAATCCAAATAGTGATGAAAGGCCTTCTATGAGAAGAGTTTTGCAGATTCTTAACAATGAAGGTGTGCCTCTTGTTGTGCCTAAAGTGAAACCTTGTCTTAGTTTCTCTTCGGGATTGTTGCTTACTCTTGATGAGATTGTTTCTGATTTTGATGAAAGGTTTTGTTCTAATCAAAATAGTTGCAAGATTCAAATTGAACCAAGTAGTTGA 1644 0.3881 MSQSSSPSSMSQTTTLITLLFFFLFPTTLSQNTTFNFPSFTLRNITLLGDSFLHDGVVGLTRSTTVPASTSGTLLYNNPISHIPNSSFSFSTNFTFSITNSNPNPPSSSPNHFSFFLNSTTPFISLDFHTNNNQISLYFNTSVQKTIDFNLTSENLITSWIDYNGFNTNFTVFLSYANSTFSKPEKPVLSVGFDLSEYFKDVEFLYVGFLGSALGSTELQQIMNWSFESSQFLDINQTQDKNSSFHHVGYENEDIPASNSTKKSHGKRFVIGLCVAIVGPSFFFLLLFVLGFFSYRKWSSLRKVNKSKNSMGCPTEFGYKELKFATKGFHGSRIIGNGSFGTVYKALFVSSGTVAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKNELLLVYEFMVNGSLDKLLYREAIECGVLLSWVQRFNIVVGLASVLAYLHQEWKIIEAVDKRLNGEFDEVEMEKMLLLGLSCANPNSDERPSMRRVLQILNNEGVPLVVPKVKPCLSFSSGLLLTLDEIVSDFDERFCSNQNSCKIQIEPSS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3846 547 Gene3D - 30 231 - -
Psa5g3846 547 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.7-RELATED 31 447 - -
Psa5g3846 547 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.7-RELATED 444 527 - -
Psa5g3846 547 PANTHER - 31 447 - -
Psa5g3846 547 PANTHER - 444 527 - -
Psa5g3846 547 ProSitePatterns Protein kinases ATP-binding region signature. 335 358 IPR017441 GO:0005524
Psa5g3846 547 Pfam Legume lectin domain 142 240 IPR001220 GO:0030246
Psa5g3846 547 Pfam Legume lectin domain 33 121 IPR001220 GO:0030246
Psa5g3846 547 SUPERFAMILY Protein kinase-like (PK-like) 319 501 IPR011009 -
Psa5g3846 547 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 234 IPR013320 -
Psa5g3846 547 ProSiteProfiles Protein kinase domain profile. 329 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3846 547 Pfam Protein kinase domain 330 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3846 547 Gene3D Transferase(Phosphotransferase) domain 1 450 502 - -
Psa5g3846 547 Gene3D Transferase(Phosphotransferase) domain 1 319 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3846 Psa-Chr5 303356385 303358496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3846 435 530 Receptor kinase-like Gene Family AT5G55830 61.458 1.98e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Psa5g3846 Lectin_legB 1.3e-20 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3846 - - gmx:100808744 404.831