Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3843 ATGTCTGAAAACTTAAGGAATCTCTCACTTTCTCCCAAAAACTTCTCCTTCACCTTCACCTTGTTTCTCTTATTAAACTCTTTTCTTCTCATTCCATTTTGTTACTCTAACTCACTCAATGAACAAGGACAAGCTCTTCTAGCATGGAAAAACAGTTTAAACAATACTTCAGAAGCTTTAGATGCATTATCATCATGGAATTCTTTAACCACAACACCATGCAACACCTGGTTTGGAGTGTATTGCAATCCACAAGGAGATGTCATAGAGATAAACTTGAAATCGTTGCGTTTACAAGGCGAGTTACCTTCGAATTTTCAACCTCTAAAGTCCTTGAAGGCTCTTGTTCTCTCGTCGACAAACATCACAGGAAGGATACCGAAAGAGATTGGAGATTATCACGAGCTCGTCCTCGTTGATCTAAGTGGAAACTCTTTGTTTGGTGAAATACCAGAAGAAATTTGCAGACTAAGCAAACTTGAGAGTTTGTTTCTTCACACGAATTTCTTCGAAGGAGACATTCCATCCAACATTGGAAATCTAACAAGTCTTGTGAACTTTACACTCTATGATAATCATTTGAGTGGCGAAATTCCAAAGAGTGTTGGTTTGTTGAACAAGCTTCAAGTGTTTCGAGCGGGTGGTAATAAGAATCTCAAAGGTGAGATTCCTTTCGAGATCGGAAACTGCACAAACTTGATCCTATTAGGCCTCGCAGAAACAAGTATTTCAGGAAGCATACCTTCTTCGATCCAAATGCTGAAGAGAATCAGAACTATAGCCATTTACACAACAATGTTATCAGGCTCAATTCCATTAGAGATTGGAAATTGCAGTGAGTTGCAGAATCTTTACTTGTATCAGAACTCTCTCTCGGGTTCAATTCCAACTCAAATTGGAGAACTTCACAATTTAAAGAGTCTACTCTTATGGCAGAACAATTTAGTAGGTACTATTCCAGAAGAGCTTGGAAGGTGCAAAGAGATTCAAGTCATTGACTTTTCGGAAAATCTCTTAACAGGTAGCATACCGAAGATTCTCGGCGAGCTTTCAAATCTTCAAGAGCTTCAACTGAGTGTGAATCATCTCTCAGGCATCATACCTCCGGAGATTTCAAATTGCGTTTCTTTGACGCAACTTGAAGTTGACAACAATGCTCTCTCCGGTGAGATTCCTCCTCTTATTGGCAACTTGAGAAGCTTGAACTTGTTCTTTGCATGGCAGAACAAGTTAACAGGAAAAATTCCGGAGAGTCTTTCAGATTGTCAAGAACTTCAATCACTCGATCTTTCTTACAATAACTTGATCGGTGCAATACCAAAAAAGCTATTTAATTTGAGGAATCTCACAAAACTTTTGCTCATTTCCAATGATTTATCAGGCTTTATACCACCTGATATAGGAAACTGCACAAACCTCTATAGACTTAGATTGAATCACAATAGAATATCAGGTAACATTCCGAATGAAATCGGTAACTTGAATAGTTTGAATTTTGTGGATATAAGTAGCAATCATCTAGTAGGTGAGATTCCTCCAACACTTTCTAGATGTCAAAATCTTGAGTTTCTAGACTTTCATTCAAATAGTCTCACCGGTTCGATTCCAGATTCTCTTCCTAAAAGCCTACAATTGATTGATTTGTCGGACAATAGTCTATCAGGTGAATTGAGTCATACCATTGGTTCGTTGGTCGAGTTAAGTAAACTAAACTTAGGAAAGAATCAATTAAGTGGAAGAATCCCATCAGAGATTTTGTCTTGTAATAAGCTACAGCTTCTAGACCTTGGAAGCAACAGTTTCACTGGAGAAATTCCAAAGGAATTGAGTCTAATTCCTTCTCTAGAAATCTCTCTTAATCTCAGTTTCAACCATTTTTCTGGTGAAATACCATCACAATTCTCGAGTCTTGGGAAACTAGGAGTGCTTGATCTCTCGCATAACAATCTCTCAGGGAATTTAGATTCTCTTTCCGACCTTGAAAATCTTGTTTTGTTAAATGTTTCCTTCAATTCCTTCTCTGGTAAGTTACCTAACACTCCTTTCTTTCGGAAACTCCCTCTTAGTGATCTTGCCGAAAACGAAGGTCTCTACGTTGCTGGAGATATTGGTGATAGAATGGAATCCAAAGGTCATGCAAAACCGGTTATGAAATCTGTAATGTCTATTCTATTAAGCACGAGTGCAGTGGTAGTTCTGCTCACAGTCTATGTCTTGATTCGTTCGCACATAGCGGACAAATCACTCATGGAAAATGAAAGTTGGGAGGTGACTTTGTATCAAAAGTTTGAACTCTCCATTGACGACATTGTCTTGAATCTGACATCATCCAATGTGATTGGCACCGGAAGTTCAGGAGTTGTTTACAAGGTAATAATTCCAAACGGCGAAACACTCGCGGTTAAAAAGATGTGGTCATCAGAAGAATCAAGAGCATTCGATTCCGAAATTCAAACTTTAGGTTCAATCAGACACAAGAATATCATTAGGCTTCTCGGTTGGGGATCCAACAGGAATCTGAAGCTTCTGTTTTACGACTATCTTCCCAACGGAAGCCTTAGCTCGTTACTTCATGGTTCAGGAAAGGGAAAAGCGGAATGGGAAACAAGATATGATGTTATATTAGGTGTGGCTCACGCACTTGCATATTTGCACCATGATTGTGTTCCTGCTATAATGCATGGAGATGTCAAAGCCATGAATGTTTTATTAGGTCCAAGCTATCAACCTTACCTCGCCGACTTTGGCTTAGCAAGAATCGCAACTGAAAATGACGACGATACTAATTCGAAGCCAGCTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAACATGCATCAATGCAGCCTATAACTGAGAAAAGTGATGTTTACAGTTATGGTATGGTTCTACTTGAGGTCTTAACAGGAAGGCACCCGTTAGATCCGACTCTTCCGGGAGGTGCAAACATGGTTCAATGGGTTAGAAACCATTTATCTAGCAAAGGCGATCCTTCTGAAATCCTCGACACAAAGCTTAGAGGAAGGGCTGATCCTACCATGCATGAAATGCTACAAACTTTAGCAGTGTCATTTCTCTGTGTAAGCACGAGAGCGGTTGACCGTCCCGCAATGAAAGATGTTGTCGCAATGCTCAAGGAAATTAAGCCTGTCGAGACATCAAGAGCAGACACTGATGTATTGAAGTTAGGAGGTTTAACATCATCTCATAGTTCTCCACCACCTCCTAAGAATGTACTTTCGCATGGATCTTCTACTTGCTCCTATAATTTCTCGGACGGTTGA 3297 0.397 MSENLRNLSLSPKNFSFTFTLFLLLNSFLLIPFCYSNSLNEQGQALLAWKNSLNNTSEALDALSSWNSLTTTPCNTWFGVYCNPQGDVIEINLKSLRLQGELPSNFQPLKSLKALVLSSTNITGRIPKEIGDYHELVLVDLSGNSLFGEIPEEICRLSKLESLFLHTNFFEGDIPSNIGNLTSLVNFTLYDNHLSGEIPKSVGLLNKLQVFRAGGNKNLKGEIPFEIGNCTNLILLGLAETSISGSIPSSIQMLKRIRTIAIYTTMLSGSIPLEIGNCSELQNLYLYQNSLSGSIPTQIGELHNLKSLLLWQNNLVGTIPEELGRCKEIQVIDFSENLLTGSIPKILGELSNLQELQLSVNHLSGIIPPEISNCVSLTQLEVDNNALSGEIPPLIGNLRSLNLFFAWQNKLTGKIPESLSDCQELQSLDLSYNNLIGAIPKKLFNLRNLTKLLLISNDLSGFIPPDIGNCTNLYRLRLNHNRISGNIPNEIGNLNSLNFVDISSNHLVGEIPPTLSRCQNLEFLDFHSNSLTGSIPDSLPKSLQLIDLSDNSLSGELSHTIGSLVELSKLNLGKNQLSGRIPSEILSCNKLQLLDLGSNSFTGEIPKELSLIPSLEISLNLSFNHFSGEIPSQFSSLGKLGVLDLSHNNLSGNLDSLSDLENLVLLNVSFNSFSGKLPNTPFFRKLPLSDLAENEGLYVAGDIGDRMESKGHAKPVMKSVMSILLSTSAVVVLLTVYVLIRSHIADKSLMENESWEVTLYQKFELSIDDIVLNLTSSNVIGTGSSGVVYKVIIPNGETLAVKKMWSSEESRAFDSEIQTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALAYLHHDCVPAIMHGDVKAMNVLLGPSYQPYLADFGLARIATENDDDTNSKPAQRHYLAGSYGYMAPEHASMQPITEKSDVYSYGMVLLEVLTGRHPLDPTLPGGANMVQWVRNHLSSKGDPSEILDTKLRGRADPTMHEMLQTLAVSFLCVSTRAVDRPAMKDVVAMLKEIKPVETSRADTDVLKLGGLTSSHSSPPPPKNVLSHGSSTCSYNFSDG* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3843 1098 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1065 - -
Psa5g3843 1098 SUPERFAMILY RNI-like 315 676 - -
Psa5g3843 1098 Pfam Protein kinase domain 777 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3843 1098 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1065 - -
Psa5g3843 1098 SUPERFAMILY RNI-like 90 397 - -
Psa5g3843 1098 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Psa5g3843 1098 Gene3D Ribonuclease Inhibitor 154 249 IPR032675 -
Psa5g3843 1098 Gene3D Ribonuclease Inhibitor 440 539 IPR032675 -
Psa5g3843 1098 Gene3D Ribonuclease Inhibitor 618 701 IPR032675 -
Psa5g3843 1098 MobiDBLite consensus disorder prediction 1069 1088 - -
Psa5g3843 1098 Gene3D Phosphorylase Kinase; domain 1 739 847 - -
Psa5g3843 1098 ProSiteProfiles Leucine-rich repeat profile. 639 661 IPR001611 GO:0005515
Psa5g3843 1098 Gene3D Ribonuclease Inhibitor 540 617 IPR032675 -
Psa5g3843 1098 Pfam Leucine rich repeat N-terminal domain 40 83 IPR013210 -
Psa5g3843 1098 ProSitePatterns Protein kinases ATP-binding region signature. 780 803 IPR017441 GO:0005524
Psa5g3843 1098 ProSiteProfiles Protein kinase domain profile. 774 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3843 1098 Gene3D Ribonuclease Inhibitor 346 439 IPR032675 -
Psa5g3843 1098 SMART LRR_typ_2 302 326 IPR003591 -
Psa5g3843 1098 SMART LRR_typ_2 350 374 IPR003591 -
Psa5g3843 1098 SMART LRR_typ_2 637 660 IPR003591 -
Psa5g3843 1098 SMART LRR_typ_2 494 518 IPR003591 -
Psa5g3843 1098 SMART LRR_typ_2 446 470 IPR003591 -
Psa5g3843 1098 SMART LRR_typ_2 564 588 IPR003591 -
Psa5g3843 1098 SMART LRR_typ_2 157 181 IPR003591 -
Psa5g3843 1098 Gene3D Ribonuclease Inhibitor 250 345 IPR032675 -
Psa5g3843 1098 SMART serkin_6 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g3843 1098 Gene3D Transferase(Phosphotransferase) domain 1 848 1067 - -
Psa5g3843 1098 SUPERFAMILY Protein kinase-like (PK-like) 771 1049 IPR011009 -
Psa5g3843 1098 Gene3D Ribonuclease Inhibitor 41 153 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3843 Psa-Chr5 302786851 302790915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3843 34 1097 Receptor kinase-like Gene Family AT5G56040 65.453 0.0 1389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa5g3843 Pkinase 9.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3843 - - gmx:100802880 1701.8