LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g3816	ATGCAACCCAAGTCTGAAACTGCAAATCAAGTGAGGTCGGATCCTCATTCCTTACAGGCCGGTGGTGTTGGTGGTGTTTACTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGTGCAAACAATGTCTGGTGCCAATTCATCTTCTCTTGACTGCCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTATGTCTAATAGTGGGATGAATGAGGAAGATGATGATGCCGCTAAGGATTCGCAGCCTGCTGCTCCTAATCAATCAGAAAATTATGGGCAAGAACAACAAGGAATACAGCACACTGCATCATCTGCACTTGTTACTGTTCCCGAAGAAGGCCTCACACAGACTCCTCCGATGGAGCTTGTTGGTCATTCAATTGCATGTGCTACGAATCCCTATCAGGATCCATATTATGGGGGGATGATGGCAGCTTATGGTCACCAGCAGTTGGCATATCATCCTTTTATAGGAATGCCTCATCCCAGAATGCCTTTGCCCCTCGAGATGACTCAGGAACCTGTTTATGTGAATGCCAAGCAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACAGGAGGACGGTTTGCAAAGAAAACTGATGGCGAAGGCTCAAACAACTCAGGAAAGGATAATGGCTCTGGTCCAGTCCTGTCATCACAGTCAATTAGTTCATCTGGTTCAGAACCCTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAATGAAAACGGTGGTGTCTCCTACCATAATAACAACAATGGTATGCAATCTTCAAGATATCAAGGTGAAAGAGTTGATGAAGGGGACTGTTCGGGGCAACTACGCGGAAGCATCTCCTCGAACGAGGCATCGCAGAGACGCCTAGCTATTCAGTAG	1017	0.4671	MQPKSETANQVRSDPHSLQAGGVGGVYSEPWWRGVGYNPVVQTMSGANSSSLDCPNGDSESNEEGQSMSNSGMNEEDDDAAKDSQPAAPNQSENYGQEQQGIQHTASSALVTVPEEGLTQTPPMELVGHSIACATNPYQDPYYGGMMAAYGHQQLAYHPFIGMPHPRMPLPLEMTQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNNSGKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMRQDARGSNENGGVSYHNNNNGMQSSRYQGERVDEGDCSGQLRGSISSNEASQRRLAIQ*	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	210	229	-	-
	Psa5g3816	338	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9	31	328	-	-
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	320	338	-	-
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	237	307	-	-
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	1	16	-	-
	Psa5g3816	338	SMART	cbf3	174	235	IPR001289	GO:0003700\|GO:0006355
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	46	103	-	-
	Psa5g3816	338	PRINTS	CCAAT-binding transcription factor subunit B signature	178	200	IPR001289	GO:0003700\|GO:0006355
	Psa5g3816	338	PRINTS	CCAAT-binding transcription factor subunit B signature	209	232	IPR001289	GO:0003700\|GO:0006355
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	208	338	-	-
	Psa5g3816	338	ProSiteProfiles	NF-YA/HAP2 family profile.	175	235	IPR001289	GO:0003700\|GO:0006355
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	85	103	-	-
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	46	74	-	-
	Psa5g3816	338	MobiDBLite	consensus disorder prediction	1	31	-	-
	Psa5g3816	338	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	177	232	IPR001289	GO:0003700\|GO:0006355
	Psa5g3816	338	Gene3D	-	175	237	-	-
	Psa5g3816	338	ProSitePatterns	NF-YA/HAP2 subunit signature.	180	200	IPR018362	GO:0003677\|GO:0016602
	Psa5g3816	338	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	31	328	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g3816	Psa-Chr5	300886078	300890578	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g3816	26	277	CCAAT-HAP2 Transcription Factor Family	AT5G12840	54.864	6.12e-85	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Psa5g3816		CBFB_NFYA	1.4e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g3816	K08064		-	gmx:100808378	499.59