Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3786 ATGGCTAGAGAAAATTCCACTCTCCCCATCTGTTTCTTCAAGATTATTCTTCAAACCAATCTTCAAACTATTAAAATACCGAATAAGTTTACAAGGAGCCACGGGGCTCGTCTACCAAATCCAGTGATGATCAACCCTCCCGATGGCACTAAATGGAAAGTGTTTTGGAAAAACATCAATGGTGAGATTTGGTTTCAAAAAGGTTGGAAAACCTTTACTCAAAACTACTCTCTTCAAAATGGTTGTTTTGTAGTCTTTAAATATAAAGAAGGAACTTCAGAGTTAGATGTACTAATAATTGGCCAGAATGGAGTAGAAATTGATTATGATTCTTCATGTGACACTTCTGATGATGGAAATGAAAACCTTGAACATAGTGATGATGAATCAGTTGAGATTTTGAATGAATGGCATTATCCGAAGAAGGCTAAACAGCTGTCAACATTAGCTTCTACTAGGCCACATAAAAAAGTTAAAGGTGAGATTGAGAAGAATAGTCAAAGAACTACATCATTGAATAAGCCAAAGGAAACTAGAGCTCGGGAAGTTGCTTATGAATTTATCTCAAGCAATCCGTTTTTCACAATTTTGATCAACCCTGCTAATCTGGCAGCAAATCGTTTGAGTATACCGAATTTGAAAGGGATTATTGAGAACAAGGAGGCGAATGTGAATCTGCAAATTGGTAAAAGATCATGGAATCTGAAATTGCTTTGTTGTTACAATAAGAAAAGTGAACGTCGTCTTTCGGCTGGTTGGTTTTTGTTTGTGAGGGAAAGTGGATTGCAAGCCGGAGATGTGTGCGTCTTTGAACTGATAAACAAGAAGGATTTAGTTTTTGAAGTTCATGTTTTCTAA 858 0.3648 MARENSTLPICFFKIILQTNLQTIKIPNKFTRSHGARLPNPVMINPPDGTKWKVFWKNINGEIWFQKGWKTFTQNYSLQNGCFVVFKYKEGTSELDVLIIGQNGVEIDYDSSCDTSDDGNENLEHSDDESVEILNEWHYPKKAKQLSTLASTRPHKKVKGEIEKNSQRTTSLNKPKETRAREVAYEFISSNPFFTILINPANLAANRLSIPNLKGIIENKEANVNLQIGKRSWNLKLLCCYNKKSERRLSAGWFLFVRESGLQAGDVCVFELINKKDLVFEVHVF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3786 285 CDD B3_DNA 11 100 IPR003340 GO:0003677
Psa5g3786 285 Gene3D - 7 104 IPR015300 -
Psa5g3786 285 PANTHER B3 DOMAIN-CONTAINING 9 285 - -
Psa5g3786 285 SUPERFAMILY DNA-binding pseudobarrel domain 189 285 IPR015300 -
Psa5g3786 285 Gene3D - 172 285 IPR015300 -
Psa5g3786 285 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Psa5g3786 285 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 285 - -
Psa5g3786 285 ProSiteProfiles B3 DNA-binding domain profile. 193 285 IPR003340 GO:0003677
Psa5g3786 285 SMART B3_2 193 283 IPR003340 GO:0003677
Psa5g3786 285 SMART B3_2 12 103 IPR003340 GO:0003677
Psa5g3786 285 Pfam B3 DNA binding domain 193 285 IPR003340 GO:0003677
Psa5g3786 285 Pfam B3 DNA binding domain 20 99 IPR003340 GO:0003677
Psa5g3786 285 CDD B3_DNA 193 285 IPR003340 GO:0003677
Psa5g3786 285 SUPERFAMILY DNA-binding pseudobarrel domain 10 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3786 Psa-Chr5 297726039 297727532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3786 8 285 B3 DNA Binding Superfamily AT3G18990 26.239 4.82e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g3786 B3 5.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3786 - - mtr:MTR_3g061330 323.168