Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3785 ATGCTCCTAAACGCTCTAGTAACTCATCAAACTTCATCATCCATGGCTAGAGGAAGTTCCAACCTCCCCATCTGTTTCTTCAAGATTATTCTTCAAACCAGTCTTCAAACTATTAAAATACCAAATACGTTTACAAGGAGCCACGGAGCTCGTCTACCAAATCCAGTGTTGATGAAGCCTCCTGATGGCACTAAATGGGAAGTGTTTTGGAAAAACATCAATGGTGAGATTTGGTTTCAAAAAGGTTGGAAAACCTTTACTCAAAATTACTCTCTACAAAACGGTTGTTTTGTAGTCTTTAAATATAAAGAAGGAACTTCAGTGTTAGATGTAATCATACTTGGCCATAATGGAGTAGAAATTCATTATGATTCTTCACGTGACACTTTTGATGTTGAAAATAAAAACCTTAACCATAGTGATGATGAATCAGTTGAGATTTTGAATGAATGGCATTATCCGAAGAAGGTTAGAAAGAGGTCAGCATTAGCTTCTCCTAGACCACATAAAAAAGTTACAGGTGAGATTGAGAAGGATAGTCAAAGAACTACATCATTGAATAGACCAAAGGATCCTAGAGCTCAGGAAGTTGCTGATGAATTTATCTCAACCAATCCCTTTTTCACAATTTTGATCAAGCCTTGTTATCTGTTAGAAAGTCGTCCGAGAGTACCGAGTTTAAAAGGGACTATGAACAAGACGATGAATGTGAAGCTGCAAATTGGTAAAAGATCATGGAATCTGAAATTGCTTCGTTCTTACAATAACGAAACTGGCCGTTATCTTTCGGCTGGTTGGACGTCTTTTGCACGGGAAAGTGGACTGCAGCCAGGGGATGTTTGCGTCTTCGAACTGATAAACAAGGAAGATTTAGTTTTCAAAGTTCATGTTTTTCCGATTTTACTGTTAATTTGA 915 0.376 MLLNALVTHQTSSSMARGSSNLPICFFKIILQTSLQTIKIPNTFTRSHGARLPNPVLMKPPDGTKWEVFWKNINGEIWFQKGWKTFTQNYSLQNGCFVVFKYKEGTSVLDVIILGHNGVEIHYDSSRDTFDVENKNLNHSDDESVEILNEWHYPKKVRKRSALASPRPHKKVTGEIEKDSQRTTSLNRPKDPRAQEVADEFISTNPFFTILIKPCYLLESRPRVPSLKGTMNKTMNVKLQIGKRSWNLKLLRSYNNETGRYLSAGWTSFARESGLQPGDVCVFELINKEDLVFKVHVFPILLLI* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3785 304 SMART B3_2 26 117 IPR003340 GO:0003677
Psa5g3785 304 SMART B3_2 207 299 IPR003340 GO:0003677
Psa5g3785 304 CDD B3_DNA 25 114 IPR003340 GO:0003677
Psa5g3785 304 MobiDBLite consensus disorder prediction 159 194 - -
Psa5g3785 304 Pfam B3 DNA binding domain 33 105 IPR003340 GO:0003677
Psa5g3785 304 Pfam B3 DNA binding domain 233 298 IPR003340 GO:0003677
Psa5g3785 304 Gene3D - 187 300 IPR015300 -
Psa5g3785 304 SUPERFAMILY DNA-binding pseudobarrel domain 203 298 IPR015300 -
Psa5g3785 304 ProSiteProfiles B3 DNA-binding domain profile. 244 301 IPR003340 GO:0003677
Psa5g3785 304 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 20 298 - -
Psa5g3785 304 MobiDBLite consensus disorder prediction 170 186 - -
Psa5g3785 304 Gene3D - 21 118 IPR015300 -
Psa5g3785 304 ProSiteProfiles B3 DNA-binding domain profile. 23 117 IPR003340 GO:0003677
Psa5g3785 304 SUPERFAMILY DNA-binding pseudobarrel domain 24 124 IPR015300 -
Psa5g3785 304 PANTHER B3 DOMAIN-CONTAINING 20 298 - -
Psa5g3785 304 CDD B3_DNA 207 299 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3785 Psa-Chr5 297707548 297708847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3785 22 300 B3 DNA Binding Superfamily AT3G18990 26.608 7.02e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g3785 B3 1.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3785 - - mtr:MTR_3g061330 295.049