Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3758 ATGACGTCCTACTCACGAAGATCAAGGTATTCGCCCTCTCCATCTCCCTCACCCTCGCCATACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTTTCTCGAGGTCCAGATCCAGAAGCCGTTTGAGGAGTGTATCGCCAGATGCTGAAAATCCGGGAAACAATTTGTATGTGACAGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAGGGAAAAGTGATAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGATACTCTAGAAGAAGCTGATCGATGTGTGAAGTATCTGGATCGCTCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGTGGTCGAACCCCAACACCTGGGAAATATCTAGGTCTCAGGACTATTCGAGGACGGCGTCGTTCTTCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCATATAGAAGAAGCTACAGTCGATCACCTTCTGATCGTAGTAGAAGTCGCTCTTACTCTCCTGACTATAGGCGGAGGAAGTCCCACTCTCCTGAATACAGGCGAAGGAGGGCATACTCGCCATACTCTAGCAGACACAGATCATACTATCATTATGACCGACACAGGTCATATTCCCGGTCTCGCTCTCCTTACAGCATGTCTCCTGTCAGCACGCGTGACCGATCACACTCTCCCTACAACTCCAGATATGACTCACCTGATGATAGCTACTACAAAAGGTACCGTTACAGGTCAGTTTCCCGAAGTGTCTCACCCAAGCCAAGGAGGTCAAGGAGGAGGAGTTACTCAAGAAGTGCCTCTCCTGTTCGAAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGAAATGGTGGTTATTCCAAACTTTATCATTCTCGATCAAGAAGTTCAAGTGTAAGGGCGAGTTCTAGATCGTTTTCAAGGTCCAATACTCCCGGATCTACTTCTCCTTCAAATTGA 1044 0.4818 MTSYSRRSRYSPSPSPSPSPYRRYGRSLSRSFSRSRSRSRLRSVSPDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRRRSSSYSPRRSPSYSPYRRSYSRSPSDRSRSRSYSPDYRRRKSHSPEYRRRRAYSPYSSRHRSYYHYDRHRSYSRSRSPYSMSPVSTRDRSHSPYNSRYDSPDDSYYKRYRYRSVSRSVSPKPRRSRRRSYSRSASPVRSVSPRPRKRSGRSHSRSSRRNGGYSKLYHSRSRSSSVRASSRSFSRSNTPGSTSPSN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3758 347 MobiDBLite consensus disorder prediction 244 262 - -
Psa5g3758 347 SMART rrm1_1 54 127 IPR000504 GO:0003723
Psa5g3758 347 MobiDBLite consensus disorder prediction 130 347 - -
Psa5g3758 347 MobiDBLite consensus disorder prediction 20 34 - -
Psa5g3758 347 Gene3D - 4 137 IPR012677 -
Psa5g3758 347 MobiDBLite consensus disorder prediction 227 243 - -
Psa5g3758 347 MobiDBLite consensus disorder prediction 174 205 - -
Psa5g3758 347 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 12 270 - -
Psa5g3758 347 SUPERFAMILY RNA-binding domain, RBD 46 157 IPR035979 GO:0003676
Psa5g3758 347 MobiDBLite consensus disorder prediction 1 54 - -
Psa5g3758 347 PANTHER TRANSFORMER-2-RELATED 12 270 - -
Psa5g3758 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Psa5g3758 347 MobiDBLite consensus disorder prediction 157 173 - -
Psa5g3758 347 MobiDBLite consensus disorder prediction 269 283 - -
Psa5g3758 347 MobiDBLite consensus disorder prediction 307 347 - -
Psa5g3758 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3758 Psa-Chr5 296319580 296322452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3758 54 158 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 2.28e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3758 - - mtr:MTR_3g462330 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3758 5 296319580 296322452 Psa5g3758 5 296319580 296322452 ECH