Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3749 ATGAATTACATTCTTCCATCCTTCCTCGTCATATGTAAAGCTAACAACTTCATCATGATTCGGTCTCGTACTTATGGTTCAACAAAAAATCATGCAAATAGAATTCAAAATACACTCAAGAGAAAATCTGTTGCAGCAGACATAGATAATGAAAAGAAGGAAACAAAGGAAGCAGCAACTAGTTATCAAGGTCAATCCTCAACAAGATTCAGCTGTGGTATATGTTTTGATTCTGTAAAAGTCTATGAAATGTTCACAAACCCTTCATGCAACCACCCCTTTTGTACTAAATGCATATCCAAGCATGTCAAACTTCAAAGAAAAGAAAAAGTGCTGAAACTCAACTGTCCGGATCCAGAATGTTCCTTGGAACTCAAACCAGAACTGTTTCAATCTATTTTACCTACACAAGTCATTGAAGAATGGGAATTTGCAATTTATGAGTCTTCGATTTCTTTGAAGCAAAAGATTTACTGTCCTTATAAGAATTGTTCTGTTATGATGGTGAATGACGGGGAAGAAGTTGTTACGAAAGTCGAAAAAGGGTCAAGATGA 555 0.3568 MNYILPSFLVICKANNFIMIRSRTYGSTKNHANRIQNTLKRKSVAADIDNEKKETKEAATSYQGQSSTRFSCGICFDSVKVYEMFTNPSCNHPFCTKCISKHVKLQRKEKVLKLNCPDPECSLELKPELFQSILPTQVIEEWEFAIYESSISLKQKIYCPYKNCSVMMVNDGEEVVTKVEKGSR* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3749 184 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Psa5g3749 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Psa5g3749 184 ProSiteProfiles TRIAD supradomain profile. 68 184 IPR044066 -
Psa5g3749 184 ProSiteProfiles Zinc finger RING-type profile. 72 117 IPR001841 -
Psa5g3749 184 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 180 IPR031127 GO:0004842|GO:0016567
Psa5g3749 184 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 180 - -
Psa5g3749 184 SUPERFAMILY RING/U-box 67 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3749 Psa-Chr5 295919677 295920231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3749 72 174 C3H Transcription Factor Family AT2G31770 30.189 2.99e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3749 K11975 - mtr:MTR_3g462570 164.851